Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29070g00001 ATGGATGATGTAAGTTCTGAAATTTCTGATAAGCTTTCAGATAATGTTCTATTTACAAATCCAGAATCATGTAGCAATTTTCAAGCTTCAACATCTTTGAACACAGTTACTGAATTGTCTAATAGTACCACAAAAACATGCACTCACACTCACACTTGTAATCCACCTGGTCCTGATGATGATATTCATACACACACATGTTTTCACACACATACTCAAGTTTTTGCATCTGAAGATGACACAAATTCAAGGCCAAAAAGGACTTCTGGAAATAGAGAAGCTGTTAAAAAGTATAGGGAGAAGAAAAAGGCACAAACAGCTTATTTAGAGGAAGAAGTTAAGAAGTTGAAAGTGATAAATCAACAGCTTTTGAGGAAATTACAAGGGCAGGCACTACTTGAAGCAGAATTGTTAAGGTTAAGGAAAGTTTTTGTACAACTTAAGGGAAAAATTGACAGTGAATTAGCACTGAAACTTCAGATTGAAG 487 0.347 MDDVSSEISDKLSDNVLFTNPESCSNFQASTSLNTVTELSNSTTKTCTHTHTCNPPGPDDDIHTHTCFHTHTQVFASEDDTNSRPKRTSGNREAVKKYREKKKAQTAYLEEEVKKLKVINQQLLRKLQGQALLEAELLRLRKVFVQLKGKIDSELALKLQIE 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29070g00001 162 Pfam Basic region leucine zipper 81 134 IPR004827 GO:0003700|GO:0006355
Trme29070g00001 162 SUPERFAMILY Leucine zipper domain 85 128 IPR046347 GO:0003700|GO:0006355
Trme29070g00001 162 Gene3D - 70 149 - -
Trme29070g00001 162 PANTHER CCAAT/ENHANCER BINDING PROTEIN 37 155 IPR031106 GO:0003700|GO:0006351
Trme29070g00001 162 CDD bZIP 91 128 - -
Trme29070g00001 162 SMART brlzneu 78 146 IPR004827 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29070g00001 43 156 bZIP Transcription Factor Family AT3G51960 55.833 1.49e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trme29070g00001 bZIP_2 3e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29070g00001 K25785 - gmx:100527780 204.527