Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme29065g00001 ATGTCGTTTCATAAACTGGGTTTTGGCGAAGACGAGGTCTTGAATTGCCTTGATGAAGATAATGTCATAGGATGTGGATCGTCCGGGAAAGTCTACAAGGTTGTGCTTCGCAACGGAGAGTCTGTCGCCGTGAAGAAGATATGGGGCGGGGTCAGAGTAGAATCGGAGAGTGGAGATATTGAAAAGAATCAATTTCAAGACAATGCTTTTGATGCAGAGGTGGAAACTTTGGGAAAGATTAGGCACAAGAACATTGTCAAGCTATGGTGTTGCTGCACCACAAGGGATTGCAAGCTATTGGTTTACGAGTATATGCCAAATGGTAGTCTTGGTGATATGCTTCATAGCAGTAAAGGAGGATTGTTGGATTGGCCAACTAGGTATAAGATAGCTCTTGATGCTGCAGAAGGTCTCTCTTATCTGCATCATGACTGTGTTCCTCCTATTGTTCATAGAGATGTGAAATCTAATAACATCTTGTTGGACGAAGAGTTTGGCGCAAGGGTTGCAGATTTTGGGGTAGCTAAGGTGGTCGAATCCAATGGGAAAGGAACTAAATCCATGTCTGTGATAGCTGGCTCTTGTGGGTATATTGCACCAGGTTAG 606 0.4389 MSFHKLGFGEDEVLNCLDEDNVIGCGSSGKVYKVVLRNGESVAVKKIWGGVRVESESGDIEKNQFQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDMLHSSKGGLLDWPTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDEEFGARVADFGVAKVVESNGKGTKSMSVIAGSCGYIAPG 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme29065g00001 201 Gene3D Phosphorylase Kinase; domain 1 5 104 - -
Trme29065g00001 201 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Trme29065g00001 201 FunFam Protein kinase superfamily protein 105 177 - -
Trme29065g00001 201 Gene3D Transferase(Phosphotransferase) domain 1 105 201 - -
Trme29065g00001 201 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Trme29065g00001 201 SMART serkin_6 17 201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme29065g00001 201 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 15 200 - -
Trme29065g00001 201 ProSiteProfiles Protein kinase domain profile. 17 201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme29065g00001 201 FunFam Receptor-like protein kinase HSL1 1 104 - -
Trme29065g00001 201 SUPERFAMILY Protein kinase-like (PK-like) 14 200 IPR011009 -
Trme29065g00001 201 Pfam Protein kinase domain 19 200 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme29065g00001 Trme-Chr29065 13 618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme29065g00001 1 200 Receptor kinase-like Gene Family AT1G28440 76.847 4.89e-105 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme29065g00001 Pkinase 1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme29065g00001 - - jre:108983249 370.163