Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2902g00001 ATGCAAGAGAAAGACTGGCTATCTTTAGTTGCTGTTCATAGTGATACATGGTTACTTTCCCTTGCATTCTACTTTGGAGCCAGATTTTCATTTGATAAAACTGACAGGAAACGTCTATTCAATTTGATTAATGAACTACCAACAGTATATGAAGTTGTTACTGGTGCAGCAAAGAAACAAGTTAAAGAGAAGTCTTCAGTCTCAAACAACAGTGGCAGCAAGTCTAAGTCCAGTTCTAAAGCGCGAGCTCCTGAAACTCAGAGCAGACAACCAAAGGCGGCATTACAGCCAAAAGATGAGGAGGAAGGACTGGAAGAGCATGAGGATGATGAACATGGAGAAGCCATGTGTGGGGCTTGTGGTGATAGTAATGGTGCTGATGAGTTCTGGATCTGCTGCGACATATGTGAGAAGTGGTTCCATGGCAAATGCGTGAAGATCACTCCTGCACGCGCAGAACATATCAAGCAGTACAAGTGCCCTTCATGCAGTAGTAACAAGAGAGCTCGCTAG 513 0.4386 MQEKDWLSLVAVHSDTWLLSLAFYFGARFSFDKTDRKRLFNLINELPTVYEVVTGAAKKQVKEKSSVSNNSGSKSKSSSKARAPETQSRQPKAALQPKDEEEGLEEHEDDEHGEAMCGACGDSNGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2902g00001 170 SMART PHD_3 116 164 IPR001965 -
Trme2902g00001 170 MobiDBLite consensus disorder prediction 61 108 - -
Trme2902g00001 170 CDD PHD_AL_plant 117 166 IPR044104 -
Trme2902g00001 170 MobiDBLite consensus disorder prediction 61 93 - -
Trme2902g00001 170 FunFam PHD finger alfin-like protein 109 165 - -
Trme2902g00001 170 Pfam PHD-finger 116 165 IPR019787 -
Trme2902g00001 170 ProSiteProfiles Zinc finger PHD-type profile. 114 166 IPR019787 -
Trme2902g00001 170 Pfam Alfin 1 55 IPR021998 GO:0006355|GO:0042393
Trme2902g00001 170 SUPERFAMILY FYVE/PHD zinc finger 103 164 IPR011011 -
Trme2902g00001 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 165 IPR013083 -
Trme2902g00001 170 PANTHER CPG BINDING PROTEIN 1 169 IPR045104 GO:0006355|GO:0042393
Trme2902g00001 170 ProSitePatterns Zinc finger PHD-type signature. 117 163 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2902g00001 Trme-Chr2902 441 2491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2902g00001 1 170 Alfin-like Transcription Factor Family AT3G42790 69.412 1.27e-80 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Trme2902g00001 Alfin 5.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2902g00001 K26274 - gmx:100170700 257.684