Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28970g00001 TTCATAACTGCACAGAGCAGAAAATCTCCGCACGAAAAAACTGGTTATGTATTCCTAAGATGTGTTATAACAGGCAATGGAGGAAGTTCATATGCATATCTTGGAAGACCATGGGGACCTTTTGGAAGGGTAGTCTTTGCATTTACTTACATGGATCATTGTATAAAGTCTGCTGGTTGGAATAATTGGGGAAAAGTTGAGAATGAAAAAAGTGCCTGCTTCTACGAATACAG 233 0.3906 FITAQSRKSPHEKTGYVFLRCVITGNGGSSYAYLGRPWGPFGRVVFAFTYMDHCIKSAGWNNWGKVENEKSACFYEY 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28970g00001 77 SUPERFAMILY Pectin lyase-like 2 77 IPR011050 -
Trme28970g00001 77 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 77 - -
Trme28970g00001 77 Gene3D - 1 77 IPR012334 -
Trme28970g00001 77 Pfam Pectinesterase 2 75 IPR000070 GO:0030599|GO:0042545
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28970g00001 2 75 Carbohydrate Esterase AT5G47500 37.838 4.06e-14 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28970g00001 K01051 - gmx:100810259 154.836