Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme289271g00001 ATGAGGATTTTGCATTTTGATATTAAGCCTCATAATATTCTTCTTGATGTGAGTTTCAGTCCAAAGGTTTCGGATTTTGGACTAGCAAAGTTATATCCAACTGACAATAGCATTGTGTCGCTTACCGCTGCAAGAGGAACTATGGGATACATGGCACCAGAATTGTTCTATAAGAACATTGGAGGAGTATCGTACAAAGCTGATGTTTATAGTTTTGGAATGTTGTTAATGGAAATGGCGAGTAGGAGAAGGAACATGAATGAGGGTGAAGATCGTAAGAGTCAAGTTTATTTCCCTTCTTGG 303 0.3828 MRILHFDIKPHNILLDVSFSPKVSDFGLAKLYPTDNSIVSLTAARGTMGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASRRRNMNEGEDRKSQVYFPSW 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme289271g00001 101 ProSitePatterns Serine/Threonine protein kinases active-site signature. 3 15 IPR008271 GO:0004672|GO:0006468
Trme289271g00001 101 Pfam Protein kinase domain 2 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme289271g00001 101 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 101 IPR045874 GO:0004672
Trme289271g00001 101 ProSiteProfiles Protein kinase domain profile. 1 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme289271g00001 101 Gene3D Transferase(Phosphotransferase) domain 1 1 99 - -
Trme289271g00001 101 SUPERFAMILY Protein kinase-like (PK-like) 2 92 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme289271g00001 Trme-Chr289271 8 310 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme289271g00001 2 101 Receptor kinase-like Gene Family AT4G18250 55.882 4.75e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme289271g00001 Pkinase 1.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme289271g00001 - - cam:101507916 201.06