Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28925g00001 TTAAGCGGTTTAAGAGATTTCTTCAACTATATGACAATTGTAGTTGCAGAACTTGCAGATTTAAGAATCATAAGTGAATTAACGAGTGATGTTACGCAGGCATTAGGTGCAGTGGGTGGTGCTATGGCAATTAAAGAAGTAATGCCGCCAAAATATAGCCACATGATCGGAGGACCTGCTTTGAAGGTTGATTTGCATACCGGAGCTATTGCAGAAGGAGTGTTGACATTTGTAATCACTTTTCTCGTTCTCTTCATCTTGCTCAAAGGTCCTCGTAGCGAATTCATGAAGACTTTGTTGATGGCTATGTCGACCGTGGCTATGATCCTCGCTGGTTCTGCTTACACCGGACCATCCATGAACCCTATCCTTGTGAGTGATTAA 384 0.4245 LSGLRDFFNYMTIVVAELADLRIISELTSDVTQALGAVGGAMAIKEVMPPKYSHMIGGPALKVDLHTGAIAEGVLTFVITFLVLFILLKGPRSEFMKTLLMAMSTVAMILAGSAYTGPSMNPILVSD 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28925g00001 127 PRINTS Major intrinsic protein family signature 25 44 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme28925g00001 127 PRINTS Major intrinsic protein family signature 71 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme28925g00001 127 PRINTS Major intrinsic protein family signature 102 124 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme28925g00001 127 PANTHER AQUAPORIN SIP1-1 22 123 IPR044222 GO:0015250
Trme28925g00001 127 Gene3D Glycerol uptake facilitator protein. 12 125 IPR023271 -
Trme28925g00001 127 Pfam Major intrinsic protein 29 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme28925g00001 127 SUPERFAMILY Aquaporin-like 12 123 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28925g00001 Trme-Chr28925 676 1186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28925g00001 46 122 Major Intrinsic Protein MIP AT3G04090 61.039 1.31e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28925g00001 K09875 - fve:101311201 135.961