Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28905g00001 ACTGATCAGGGAGTTTCTCAAGCAATTATACGATCTGATATTGACTTTAATAGGGAGCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTTAAAAAGATGCTTGATCCTGACCCAAAGCGCCGATTTACTGCACAGGAAGTGTTAGATCATCAATGGTTGATCAACCTTGTTAAGACGGAACCCGATACGGCAAAAGACCTTGTTATGAATATGCTTAATGCACATGATGTGTTGGGTCATCCATGGTTGCAGAATACAAAGACAACTTCTTATGTTTCATTGGGAGAAACAGTCAGAGCAAAGCTCTGGCAGTTTTCTATAATGAACCAACTTACGAAAACAACATCTAGGGTGATTGCAACGCATTTGTCTGCAATAGAATATGTTTTGGAATCAGAAAGATCCTGGTTGACGGATACAGGAGTTTATAAATTCAGCAAGATTGATGACGATGAAGTACGAGTAAGGTTGCATAAGCTAGCCCAACAAATTCCTGATTTCAATGTGCAGCGACTTATGAACGCCGTGAGTATATTGCCCTTATGA 552 0.4004 TDQGVSQAIIRSDIDFNREPWPKVSDNAKDLVKKMLDPDPKRRFTAQEVLDHQWLINLVKTEPDTAKDLVMNMLNAHDVLGHPWLQNTKTTSYVSLGETVRAKLWQFSIMNQLTKTTSRVIATHLSAIEYVLESERSWLTDTGVYKFSKIDDDEVRVRLHKLAQQIPDFNVQRLMNAVSILPL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28905g00001 183 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 57 - -
Trme28905g00001 183 Pfam Protein kinase domain 9 55 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28905g00001 183 Gene3D Transferase(Phosphotransferase) domain 1 2 55 - -
Trme28905g00001 183 SUPERFAMILY Protein kinase-like (PK-like) 5 87 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28905g00001 Trme-Chr28905 110 1070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28905g00001 1 183 EF-hand Containing Proteins AT3G57530 50.000 1.87e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme28905g00001 Pkinase 2.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28905g00001 K13412 - qsu:112012995 164.466