Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28899g00001 CTTGCACCTGAGATTCCTGAGGATCTGTACCATTTGATTAAGAAGGCTGTTTCAATCCGTAAGCATCTTGAGAGGAACAGAAAGGACAAGGACTCAAAGTTCAGACTCATCCTTGTTGAGAGCAGAATCCACCGTCTTGCTCGCTACTACAAGAAAACTAAGAAGCTTCCCCCTGTGTGGAAATAG 186 0.4462 LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28899g00001 61 Gene3D - 3 61 - -
Trme28899g00001 61 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 61 IPR023029 -
Trme28899g00001 61 ProSitePatterns Ribosomal protein S15 signature. 19 49 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trme28899g00001 61 FunFam 40S ribosomal protein S13 4 61 - -
Trme28899g00001 61 Pfam Ribosomal protein S15 5 55 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trme28899g00001 61 CDD Ribosomal_S15p_S13e 3 61 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trme28899g00001 61 SUPERFAMILY S15/NS1 RNA-binding domain 4 60 IPR009068 -
Trme28899g00001 61 SMART Ribosomal_S15_2 2 61 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28899g00001 Trme-Chr28899 172 357 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28899g00001 1 61 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 98.361 1.34e-38 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28899g00001 K02953 - jre:108987407 126.716