Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28881g00001 ATGAGTGATGATGCATTATATGGTGATAAAAAGAAGGAAAAGAGAAGAAGCAGGAATAATCGCGGCAGTGTCGATTGGTGGTTAGACGGATTCAGTGGTGAGCTATGGCGAGCACGCAGGAATAGCTTCGATTCAGCTAGTGGAGACATTCCAAAAAGTGGTGGTGTGAGTAGTACTCCAAGTATGAGAGGAACCATTTGTTATGTTGCTCCCGAGTGTGGCTATGGCGATGATGTTTCCGAAAAGTGTGACGTTTATAGCTTCGGGATCTTGTTGCTTGTTATCATTTCTGGGAGACGTCCACTTCAAGTGACCGGTTCACCGTTGTCAGAGTTTCAAAGAGCTAATCTTTTGTCATGGGCACGCCACTGTGCAAGAAATGGGAAGCTCATTGAACTGGTTGACGAGTCGATTCAGTCATTGAATAAGGACCAAGCTCTGATCTGCATCAAAGTGGCTTTACTTTGTTTGCTTAAGTCACCTGTTCGACGTCCTTCAATGAAGGAGGTTGTCGGGATGCTTAGTGGCGAGTTAGAACCACCCCAATTGCCTGTTGAGTACTCACCTTCGACTCCTTCTCGCTTTCCTTTCAAATCTAGGAAGAAAGGCCAAGGCCGGCAGGCCTTTGTTGATTTTGTGTTTGGAGATTATAATTTACAGCAAAGAACTGAAGCCATCATTGTTGTTCTTTGCACTCTCTTTCAGAAATGA 711 0.4473 MSDDALYGDKKKEKRRSRNNRGSVDWWLDGFSGELWRARRNSFDSASGDIPKSGGVSSTPSMRGTICYVAPECGYGDDVSEKCDVYSFGILLLVIISGRRPLQVTGSPLSEFQRANLLSWARHCARNGKLIELVDESIQSLNKDQALICIKVALLCLLKSPVRRPSMKEVVGMLSGELEPPQLPVEYSPSTPSRFPFKSRKKGQGRQAFVDFVFGDYNLQQRTEAIIVVLCTLFQK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28881g00001 236 PANTHER OS07G0586332 PROTEIN 10 202 IPR044576 -
Trme28881g00001 236 Gene3D Transferase(Phosphotransferase) domain 1 39 181 - -
Trme28881g00001 236 Pfam Protein tyrosine and serine/threonine kinase 59 173 IPR001245 GO:0004672|GO:0006468
Trme28881g00001 236 ProSiteProfiles Protein kinase domain profile. 1 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28881g00001 236 SUPERFAMILY Protein kinase-like (PK-like) 57 192 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28881g00001 Trme-Chr28881 145 1154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28881g00001 62 199 Receptor kinase-like Gene Family AT1G53430 39.007 1.64e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Trme28881g00001 PK_Tyr_Ser-Thr 1.3e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28881g00001 - - lja:Lj2g3v0473820.1 376.326