Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme288555g00001 ATCCTCATCGCTGCTCTTTTTCTGATGGGATTCTTCTCACTCTACATCCGTCGATGTGCCGATTCACCTTCCAACAGTATCCGAAACATGGCAGGTATTGCCGGACGGTCACGACGCGCGGCGCGTGGTCTCGACGCTTCGATACTTGAGACGTTTCCTATCTTTGAATATTCGGTGGTGAAGATTCATAAAATCGGAAAAGGTACGTTGGAATGTGCTGTTTGTTTGAATGAGTTTGAAGAGACTGAAACGCTGCGTTTGATTCCAAAGTGTGATCACGTGTTTCATCCTGAGTGTATTGATGAGTGGCTTGGTTCTCATACCACTTGTCCGGTTTGCAGAGCTAATTTGGT 353 0.4646 ILIAALFLMGFFSLYIRRCADSPSNSIRNMAGIAGRSRRAARGLDASILETFPIFEYSVVKIHKIGKGTLECAVCLNEFEETETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLV 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme288555g00001 118 FunFam E3 ubiquitin-protein ligase ATL6 33 118 - -
Trme288555g00001 118 Pfam Ring finger domain 71 114 IPR001841 -
Trme288555g00001 118 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Trme288555g00001 118 SUPERFAMILY RING/U-box 66 117 - -
Trme288555g00001 118 CDD RING-H2_EL5-like 71 114 - -
Trme288555g00001 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 118 IPR013083 -
Trme288555g00001 118 SMART ring_2 72 113 IPR001841 -
Trme288555g00001 118 PANTHER RING FINGER DOMAIN-CONTAINING 2 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme288555g00001 Trme-Chr288555 1 353 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme288555g00001 1 117 Rapid Response to Elicitors AT3G05200 64.706 4.30e-54 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme288555g00001 K10664 - gmx:100810865 207.608