Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28850g00001 ATGGTGTACATGGAGAANNNNNTNNNNNNNNNNGCGACAGATGACATTGCTGATATAGCTCCTGGTAAAGAAAATGTTTGTATTAGCGTTAGGGTCATTCGTTTGTGGAAGTTTCCTGCCTTCCTCAATCCATGTGAGTCTAGCTCTCTTGAGATGGTTTTAGTTGATGAGAAGACCAAGCGTGGAGAAGCTGCACTTGCTAGATTGAAGGTTTATGAGGAAATTCCTCCTCCATATGGCAAGATCAAGAGGATGGTTGTTCCTGATGCTCTTAAGGTGTTGAGGCTTCAAAAGAGACACGAATACTGCTTGCTTGGTTAA 321 0.4081 MVYMEXXXXXXATDDIADIAPGKENVCISVRVIRLWKFPAFLNPCESSSLEMVLVDEKTKRGEAALARLKVYEEIPPPYGKIKRMVVPDALKVLRLQKRHEYCLLG 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28850g00001 106 PANTHER RIBOSOMAL PROTEIN L13 58 101 IPR005822 GO:0003735|GO:0005840|GO:0006412
Trme28850g00001 106 Gene3D Ribosomal protein L13 50 106 IPR036899 GO:0003735|GO:0005840|GO:0006412
Trme28850g00001 106 SUPERFAMILY Ribosomal protein L13 58 105 IPR036899 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28850g00001 Trme-Chr28850 44 946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28850g00001 54 106 Cytoplasmic Ribosomal Protein Gene Family AT4G13170 77.358 2.72e-23 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28850g00001 K02872 - gmx:100813340 93.2041