Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28846g00001 GTGTTGGTGTTTTCTGTTGTTCTAGTTGCTCTTGTTTTCTGTATCCGAAAACTAAAAGGGAAGGAAAAGGGTGCAAGAACTTCTAACGGGAGCCTTCCTCCCGGAATAATCAATGTAACTCCTCAGATGCAAGAGCAAAGGGTGAAAAGTGCTGCTGTTATTACTGATCTCAAACCTCGTCCGCCTGCAGAAAATGTGACAATGGATAGGATGGCTATAAAAAGTGGATCAGTAAAGCAGATGAGGTCTCCCATCACTTCCACATCGTACACAGTTGCTACGCTCCAGAGTGCAACAAATAGCTTCAGTCAAGAATTTATTATTGGTGAAGGTTCTCTTGGTCGAGTTTACAGGGCTGAATTCCCAAATGGGAAGGTAATGGCCGTTAAGAAGATTGACAATGCAGCACTGTCCTTACAAGAAGAAGACAATTTTCTTGAAGCTATTTCGAATATGTCACGCTTGCGGCATCCGAACGTTGTTACACTGGCTGGATATTGTGCAGAACATGGCCAACGACTTCTAATTTATGAATATATTGTAAATGGAAATCTTCACGACATGCTCCATTTTGCTGAAGATAGCAGTAAAGCTTTACCTTGGAATGCCCGTGTACGGATAGCTCTTGGCACAGCCCGGGCCTTAGA 647 0.4328 VLVFSVVLVALVFCIRKLKGKEKGARTSNGSLPPGIINVTPQMQEQRVKSAAVITDLKPRPPAENVTMDRMAIKSGSVKQMRSPITSTSYTVATLQSATNSFSQEFIIGEGSLGRVYRAEFPNGKVMAVKKIDNAALSLQEEDNFLEAISNMSRLRHPNVVTLAGYCAEHGQRLLIYEYIVNGNLHDMLHFAEDSSKALPWNARVRIALGTARAL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28846g00001 215 Gene3D Transferase(Phosphotransferase) domain 1 78 215 - -
Trme28846g00001 215 ProSiteProfiles Protein kinase domain profile. 102 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28846g00001 215 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 67 179 - -
Trme28846g00001 215 Pfam Protein tyrosine and serine/threonine kinase 107 214 IPR001245 GO:0004672|GO:0006468
Trme28846g00001 215 PANTHER OS01G0253100 PROTEIN 65 215 - -
Trme28846g00001 215 SUPERFAMILY Protein kinase-like (PK-like) 79 215 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28846g00001 Trme-Chr28846 360 1193 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28846g00001 1 215 Strubbelig Receptor Gene Family AT4G22130 65.278 8.39e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trme28846g00001 PK_Tyr_Ser-Thr 1.7e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28846g00001 - - gmx:100781455 368.622