Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28801g00001 CGTACACCTACAATGATATATGTTCGTGAATCTCATGCTGAAAAGATGGACATAATTCAAGATGTTTCGTATGAGATTTTGAATGTGCTTGAGTTTAACAGTACAAGGAAGCGTCAATCTGTTGTTTGCCGTTATCCAAATGGGAGGCTTGTATTGTACTGTAAGGGTGCTGATAATGTAATCTATGAGAGACTAGTTGATGGTTCTAATGATATTAAAACAGTTACTAGGGAGCATTTGGAACAGTTTGGATCTGCTGGATTACGCACATTGTGCCTGGCATACAAAGAATTACATCCTGATGTTTATGAAAACTGGAACAAGAAGTTCCTTCATGCTAAATCCTCTCTAAGTGATCGGGAAAAGAAGTTAGATGAGGTGCATTCTTACCTCTGCTCTG 400 0.385 RTPTMIYVRESHAEKMDIIQDVSYEILNVLEFNSTRKRQSVVCRYPNGRLVLYCKGADNVIYERLVDGSNDIKTVTREHLEQFGSAGLRTLCLAYKELHPDVYENWNKKFLHAKSSLSDREKKLDEVHSYLCS 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28801g00001 133 Gene3D - 5 132 IPR023299 GO:0000166
Trme28801g00001 133 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 129 - -
Trme28801g00001 133 FunFam Phospholipid-transporting ATPase 1 132 - -
Trme28801g00001 133 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 22 102 IPR023299 GO:0000166
Trme28801g00001 133 Pfam Cation transport ATPase (P-type) 23 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28801g00001 Trme-Chr28801 603 1162 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28801g00001 1 127 Primary Pumps ATPases AT1G59820 77.953 2.10e-68 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28801g00001 K14802 - gmx:100815547 235.343