Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2879g00001 ATGAAGAAACAGAAGGAGGCTAGTTGGCATGTTAGGATGTTGACTCGCGAGATTAGGAAGTCTTTGGATAAGCATACCATCTTGTATACTACCCTTGTCGAGCTTTCCAAGGCGTTGGAGTTGCATAATTGTGCGGTTTGGATGCCTGATGAGGACAGAAGGGTGATGCATTTGACTCATGAGTTGAAACCTAATCCGGCAAAAAGTTTTCATAGTTCTATTTCTGTAAATGATTTGGATGTGTTAGAGGTAAGAAAGAGCAAGGGGGTGTCGATTTTGAGGCCTGATTCCGCACTTGGAGCTGCGAGTAGTGGTGGATCTGGGGACTCGGGTGCTGTAGCAGCCATTCGTATGCCGATACTTCATGTTTCGAATTTCAAGGGAGGGACACCGGAGTTTGTTGAGACGTCTTATGCTATACTTGTTTTGGTTCTTCCAAAATCAAACTCAAGGGCTTGGACCTACCATGAGATGGAGATAGTGGAAGTAGTTGCTGACCAGGTTGCTGTGGCCTTGTCTCATGCATCTGTTCTTGAAGAGTCTCAGCTAATGAGACAGAAACTCTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAAGTATGCAATGATGGCCAGCCAGGCAAGGAGCTCATTTGAGAAAGTGATGAGCCATGGAATGAGGAGACCCATGCATTCAATCCTGGGCTTACTTTCAATGTTTCAAGAGGATAGTATAAGATCTGAACAGAAGATTGTTGTTGACACAATGTTGAAAGTTAGCAATTCGCTCTCACGTTTGATAAATGATGTTATGGAGATTTCGGCCAACGATAAAGGAACTTTCCAGTTAGAGTCGAAACATTTCCATCTACATTCCATGATGAGGGAAGCTTCTTGTATTGCCAAGTGTTTGTGTGTATATAAAGGCTTTGGTCTTGAAATTGATGTGCAGAGATCTTTGCCTGATATGATAGCCGGTACTAGTTCCCATTCAGATGAATTAATWTTGACTAGAAGTAGTGCTAGTATGATGCACCACAACAATGAACCTAAGGAGGGCTTGAGCTTCAGCATTTGCAAAACGCTTGTGCAGATGATGCAAGGTAATATCTGGATATCACCAAACTCTCTGGGTTTGGCACAAGGAATGACACTTCTTCTCAAGTTTCAATCAGGATCATCGCGTGGAAGATTTGTTCTAGCTCATAAAGAATTTTCAAACCAACAGTTTAGAGGGCTTAATGTTATTTTAGCCGATGATGATAATGTAAACATGACTGTAACAAAGAAGCTACTTGAGAAGCTAGGTTGTCAAGTAACTGCTGTTTCATCGGGTTTTGATTGTTTGGCTGCTATAACTGCCTCCAGTGTATCATTTAAAGTCATCCTATTGGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTTGCAAGGAAGATTCGGAAGTTCCAAAGCCGAAATTGGCCCTTGATTATTGCTCTTACAGCAAGTGCAGAAGAACACATAAAGGAAAGATGCCTTCAGGTGGGAATGAATGGATTGATTCGAAAACCTATCCTCCTTCACGAGTTAGCTGATGAACTTAAAACAGTCCTGCTACGTGCAGGTGAAAAATTCTAA 1602 0.4114 MKKQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKALELHNCAVWMPDEDRRVMHLTHELKPNPAKSFHSSISVNDLDVLEVRKSKGVSILRPDSALGAASSGGSGDSGAVAAIRMPILHVSNFKGGTPEFVETSYAILVLVLPKSNSRAWTYHEMEIVEVVADQVAVALSHASVLEESQLMRQKLXXXXXXXXXXXKYAMMASQARSSFEKVMSHGMRRPMHSILGLLSMFQEDSIRSEQKIVVDTMLKVSNSLSRLINDVMEISANDKGTFQLESKHFHLHSMMREASCIAKCLCVYKGFGLEIDVQRSLPDMIAGTSSHSDELILTRSSASMMHHNNEPKEGLSFSICKTLVQMMQGNIWISPNSLGLAQGMTLLLKFQSGSSRGRFVLAHKEFSNQQFRGLNVILADDDNVNMTVTKKLLEKLGCQVTAVSSGFDCLAAITASSVSFKVILLDLHMPEMDGFEVARKIRKFQSRNWPLIIALTASAEEHIKERCLQVGMNGLIRKPILLHELADELKTVLLRAGEKF 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2879g00001 533 Gene3D - 11 183 IPR029016 -
Trme2879g00001 533 Gene3D - 393 526 - -
Trme2879g00001 533 ProSiteProfiles Response regulatory domain profile. 408 526 IPR001789 GO:0000160
Trme2879g00001 533 SUPERFAMILY CheY-like 403 526 IPR011006 -
Trme2879g00001 533 SMART REC_2 407 522 IPR001789 GO:0000160
Trme2879g00001 533 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 204 273 IPR036097 GO:0000155|GO:0007165
Trme2879g00001 533 Coils Coil 178 188 - -
Trme2879g00001 533 CDD HisKA 206 268 IPR003661 GO:0000155|GO:0007165
Trme2879g00001 533 FunFam Ethylene receptor 4 175 269 - -
Trme2879g00001 533 CDD REC_ETR-like 407 522 - -
Trme2879g00001 533 Gene3D - 199 275 - -
Trme2879g00001 533 Pfam His Kinase A (phospho-acceptor) domain 209 272 IPR003661 GO:0000155|GO:0007165
Trme2879g00001 533 SUPERFAMILY GAF domain-like 26 175 - -
Trme2879g00001 533 SMART HisKA_10 208 273 IPR003661 GO:0000155|GO:0007165
Trme2879g00001 533 Pfam GAF domain 25 172 IPR003018 GO:0005515
Trme2879g00001 533 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 1 321 - -
Trme2879g00001 533 SMART gaf_1 23 182 IPR003018 GO:0005515
Trme2879g00001 533 FunFam Ethylene receptor 405 529 - -
Trme2879g00001 533 Pfam Response regulator receiver domain 409 522 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2879g00001 Trme-Chr2879 223 2238 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2879g00001 339 531 Miscellaneous Gene Families AT3G04580 59.799 1.19e-73 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme2879g00001 GAF 5.4e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2879g00001 K14509 - sspl:121802237 560.451