Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28773g00001 ATGAACCAAGAAGAGAAAGTTACCATGGACTTGATTCCAGCTACTGATCAACACCTTTGTTATGTTCGTTGCAACTTCTGTAACACTGTCCTTGCTGTTGGAATACCATGCAAGAGGCTGCTAGATACTGTGACTGTGAAGTGTGGTCACTGCAGCAACCTCTCTTTTCTCACTACAAGACCACCAAATTCCAAAACTCCAACTGTTGATCATACCCTAACTCTCCAGGGGATTTACAGTAGCAAAAAGGGTCATCCATCATCATCTTCNNTNNNNNNNNNNTNNNNNNNNNNTGACTCATTGTCCCCTAAACCACCACCATTTGTTGTTAAACCTCCTGAGAAGAAGCATCGTCTTCCTTCTGCTTACAACCGTTTCATGAA 383 0.4047 MNQEEKVTMDLIPATDQHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRPPNSKTPTVDHTLTLQGIYSSKKGHPSSSSXXXXXXXXDSLSPKPPPFVVKPPEKKHRLPSAYNRFM 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28773g00001 127 PANTHER PROTEIN YABBY 6-RELATED 15 127 IPR006780 GO:0007275
Trme28773g00001 127 MobiDBLite consensus disorder prediction 75 123 - -
Trme28773g00001 127 Pfam YABBY protein 16 127 IPR006780 GO:0007275
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28773g00001 1 127 C2C2-YABBY Transcription Factor Family AT1G69180 61.069 3.37e-36 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trme28773g00001 YABBY 9.1e-29 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28773g00001 K25796 - gmx:100819079 185.652