Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme287355g00001 ATGAATTATTGTGGTGGAAAGATAGGTGGTGGAAGTGATCAAAGAGGAAATGGTGGTGGACCTTGTGGTGCTTGCAAATTTTTGAGAAGAAAATGTGTAAAAGGTTGCATATTTGCACCATATTTTGATTCTGACCAAGGAACGGTTCATTTTGCAGCGGTTCATAAAGTGTTTGGTGCTAGTAATGCCTCTAAGTTACTCATGCGTATTCCAGTTCATAAACGTCTTGATGCTGTTGTTACTCTTTGTTATGAAGCTCTTGCTAGGGCTAGAGACCCTGTTTATGGTTGTGTTGCTCACATCTTTGCACTTCAACAACAGGTA 324 0.4012 MNYCGGKIGGGSDQRGNGGGPCGACKFLRRKCVKGCIFAPYFDSDQGTVHFAAVHKVFGASNASKLLMRIPVHKRLDAVVTLCYEALARARDPVYGCVAHIFALQQQV 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme287355g00001 108 ProSiteProfiles LOB domain profile. 20 108 IPR004883 -
Trme287355g00001 108 Pfam Lateral organ boundaries (LOB) domain 21 108 IPR004883 -
Trme287355g00001 108 PANTHER LOB DOMAIN CONTAINING PROTEIN 19 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme287355g00001 Trme-Chr287355 31 354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme287355g00001 19 108 AS2 family AT4G00210 83.333 5.26e-52 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme287355g00001 LOB 3.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme287355g00001 - - tpra:123898243 211.846