Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28672g00001 ATGCATTCATCAAAGTTTAGCTCTAGCGACTCCTGTGATCTCCTCATATGTGATGAGGCTCACAGACTGAAAAATGATCAGACAATAACAAACAAGGCATTGGCTGCTCTCCCGTGCAAACGTAGAGTTTTGTTGTCAGGAACTCCTTTGCAGAATGACTTAGAAGAATTTTTTGCAATGGTTAACTTTACTAATCCTGGAATATTGGGTGGCATTGCACATTTTCGACGTTACTTTGAGGCGCCAATAATTTGCGGAAGAGAACCCGCTGCTACTGCAGAAGAGAAGAAACTCGGTGCTGAACGCACTGCAGAATTAAGTGCCAAAGTTAATCAG 336 0.4256 MHSSKFSSSDSCDLLICDEAHRLKNDQTITNKALAALPCKRRVLLSGTPLQNDLEEFFAMVNFTNPGILGGIAHFRRYFEAPIICGREPAATAEEKKLGAERTAELSAKVNQ 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28672g00001 112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 110 IPR027417 -
Trme28672g00001 112 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 67 IPR014001 -
Trme28672g00001 112 PANTHER SNF2/RAD54 FAMILY MEMBER 6 112 - -
Trme28672g00001 112 Gene3D - 1 112 IPR038718 -
Trme28672g00001 112 Pfam SNF2-related domain 10 94 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28672g00001 Trme-Chr28672 320 1120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28672g00001 3 88 RAD5 or RAD16-like Gene Family AT5G22750 32.292 6.80e-11 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme28672g00001 SNF2_N 1.8e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28672g00001 K10875 - gmx:100781631 206.453