Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme286568g00001 TTTGAGAACAAAGCCAAAGAAGCGTTTTTCGACGACGACTTTTCTCTCGCCGTTGATCTCTATTCTCAGGCTATCGATTTGGATCCTAATAACCCTAATCTCTTCGCCGATAGAGCACAATCTTATATCAAACTCAACTCTTTCACTGAAGCTGTTTCTGATGCTAATAAGGCTATTTTGTTAAACCCTACTTTATCTAAAGCCTATCTTAGAAAAGGGACTGCTTGTTTTAATCTTGAAGAATATCATACTGCT 255 0.3765 FENKAKEAFFDDDFSLAVDLYSQAIDLDPNNPNLFADRAQSYIKLNSFTEAVSDANKAILLNPTLSKAYLRKGTACFNLEEYHTA 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme286568g00001 85 SUPERFAMILY TPR-like 3 85 IPR011990 GO:0005515
Trme286568g00001 85 Gene3D Tetratricopeptide repeat domain 1 85 IPR011990 GO:0005515
Trme286568g00001 85 SMART tpr_5 32 65 IPR019734 GO:0005515
Trme286568g00001 85 SMART tpr_5 1 31 IPR019734 GO:0005515
Trme286568g00001 85 Pfam Tetratricopeptide repeat 13 52 - -
Trme286568g00001 85 PANTHER PROTEIN SGT1 HOMOLOG 2 85 IPR044563 GO:0051087
Trme286568g00001 85 ProSiteProfiles TPR repeat profile. 32 65 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme286568g00001 Trme-Chr286568 1 354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme286568g00001 9 82 U-box Gene Family AT3G07370 33.784 4.22e-07 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme286568g00001 K12795 - gmx:100784022 143.665