Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28647g00001 ATGGGGATTCAAACAATGGGTTCTCAAAGTAATGGGCAACAGTCTCATTTACAGGCTAATAATCAGTTAGTTAAGCAAAATTCATGGTATGGTCTTACTCTCGATGAGGTTAACAATCTACTAGGAGATTTAGGAAAGCCGTTAGGGAGCATGAATCTCGACGAGCTTCTTCAGAATGTATGGACTGCTGAAGGAAATAACGTTGTAGGGGTAGAGAGCGAGCATGTTTCATCTTCGTCTTCTCTTCAACGTCAGGCTAGTATGACGTTGGCTCGTGCTTTAAGTGGGAAAACGGTGGATGATGTATGGAGAGAAATCCAGCTAGGTCAGAAGAAACAATACGGCGGAGATGATGTGAAAATTGAGGATAGGGAAATGAGTCTTGGTGGTACAACGTTGGAAGATTTTTTAGTACAAGCTGGGCTTTACGCTGGAGCTTCTGTTAGTCCGACGGTGGGGTTGGATGCAATGGATGCTGCTATTCCTCAAAGCTTTCAACCGAAAACAAGCTTGTTATCTTCTTCTTCGATTAGTAGTTTGTCAGATGCAAAACCGGGTCGTAAAAGGGATGGACCTGATGCATACGAGAAGGCTCTGGAAAGGAGGCTGAGAAGGAAAATCAAGAATAGGGAATCTGCTGCTCGTTCACGAGCAAGAAAACAGGCTTACCATAATGANNNNNNNNCCAAGGTTACTCTTCTAGAACAGCAAAATACGCAGCTCAAGAAAGAGAAGGTTAACGATTTCAATACCTAA 756 0.4272 MGIQTMGSQSNGQQSHLQANNQLVKQNSWYGLTLDEVNNLLGDLGKPLGSMNLDELLQNVWTAEGNNVVGVESEHVSSSSSLQRQASMTLARALSGKTVDDVWREIQLGQKKQYGGDDVKIEDREMSLGGTTLEDFLVQAGLYAGASVSPTVGLDAMDAAIPQSFQPKTSLLSSSSISSLSDAKPGRKRDGPDAYEKALERRLRRKIKNRESAARSRARKQAYHNXXXXKVTLLEQQNTQLKKEKVNDFNT 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28647g00001 251 Gene3D - 199 249 - -
Trme28647g00001 251 MobiDBLite consensus disorder prediction 183 207 - -
Trme28647g00001 251 Coils Coil 224 225 - -
Trme28647g00001 251 MobiDBLite consensus disorder prediction 176 251 - -
Trme28647g00001 251 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 204 219 IPR004827 GO:0003700|GO:0006355
Trme28647g00001 251 CDD bZIP_plant_BZIP46 201 243 - -
Trme28647g00001 251 MobiDBLite consensus disorder prediction 231 251 - -
Trme28647g00001 251 Pfam bZIP transcription factor 201 244 IPR004827 GO:0003700|GO:0006355
Trme28647g00001 251 Coils Coil 230 244 - -
Trme28647g00001 251 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 199 244 IPR004827 GO:0003700|GO:0006355
Trme28647g00001 251 SMART brlzneu 197 251 IPR004827 GO:0003700|GO:0006355
Trme28647g00001 251 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 25 244 IPR043452 GO:0003700|GO:0045893
Trme28647g00001 251 SUPERFAMILY Leucine zipper domain 201 244 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28647g00001 Trme-Chr28647 136 1180 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28647g00001 18 245 bZIP Transcription Factor Family AT3G56850 40.755 5.29e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trme28647g00001 bZIP_1 2.9e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28647g00001 K14432 - gmx:100798549 329.717