Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28614g00001 TACTCAAGAGAATTATCGCGTACGGGAACAAGCATTGGTGGTAGTTTTCGATCGGATAAAGACTCAATTGGCCGTGTTGGTGGTGAGGATGGAAACAAGTCAAATCATGTTTCAGCAAAAAGACTATATTCTATGATTGGTCCTGATTGGCCTTATGGAGTTATTGGAACCTTATGTGCATTTGTTGCTGGAGCACAAATGCCTCTTTTTGCACTCGGAATCTCTCATGCTCTTGTATCATATTATATGGATTGGGAAACAACGCAACGGGAAGTTAAAAAAATTGTTTTCCTCTTCTGTGGAGGTGCAGTTATAACTGTCACAGTCCATGCCATTGAACATCTTTTTTTCGGAATCATGGGCGAGCGACTTACCCTTCGTGTGCGAGAAAAGATGTTTACCGCTATTTTGAAGAATGAAATTGGATGGTTTGATGAAACAACCAACACAAGTTCTATGCTTTCATCGCGTTTAGAGTCCGACGCAACTTTAATGCGGACAATAGTTGTTGATCGCTCGACGATTCTGTTACAGAATGTTGGTCTGGTTGTTGCTTCATTTATTATTGCCTTCCTTTTGAACTGGAGAATAACACTTGTTGTCTTGGCCACATATCCTTTGATAATTAGTGGTCACATTAGTGAGAAACTTTTCATGAAAGGCTATGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGCTTGCTGGCGAAGCCGTGAGCAATATACGCACCGTTGCCGCATTTTGTTCTGAAGAAAAGATCCTTGATCTTTACGCTAACGAGCTCGTCGGTCCTTCCAAACATTCATTTCGACGTGGTCAAATTGCTGGCATATTCTATGGCATTTCGCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTATGGTATATACTTTAA 906 0.4084 YSRELSRTGTSIGGSFRSDKDSIGRVGGEDGNKSNHVSAKRLYSMIGPDWPYGVIGTLCAFVAGAQMPLFALGISHALVSYYMDWETTQREVKKIVFLFCGGAVITVTVHAIEHLFFGIMGERLTLRVREKMFTAILKNEIGWFDETTNTSSMLSSRLESDATLMRTIVVDRSTILLQNVGLVVASFIIAFLLNWRITLVVLATYPLIISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKILDLYANELVGPSKHSFRRGQIAGIFYGISQFFIFSSYGLALWYIL 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28614g00001 301 CDD ABC_6TM_Pgp_ABCB1_D2_like 43 299 - -
Trme28614g00001 301 MobiDBLite consensus disorder prediction 1 17 - -
Trme28614g00001 301 Gene3D ABC transporter type 1, transmembrane domain 26 301 IPR036640 GO:0005524|GO:0016020
Trme28614g00001 301 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 90 300 IPR039421 -
Trme28614g00001 301 Pfam ABC transporter transmembrane region 55 299 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme28614g00001 301 MobiDBLite consensus disorder prediction 1 34 - -
Trme28614g00001 301 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 54 301 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme28614g00001 301 SUPERFAMILY ABC transporter transmembrane region 40 299 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28614g00001 Trme-Chr28614 1 1156 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28614g00001 1 299 Calmodulin-binding Proteins AT2G36910 39.203 4.53e-61 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28614g00001 K05658 - gmx:100819045 521.931