Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28609g00001 ATGCAAAAGGTGGTCGAGTTTATTGAAAATCAATCGAGCAATGTTTGTATGATAGGGATTTGGGGGATGGGTGGATCTGGTAAAACAACCACAGCCAAAGCCATCTACAATCGAATTCATCGGAAGTTTGGGCATGTAAGCTTCGTTGAAAATATTAGAGAAGCGTGTGAAAATGACTATTATAGAGGGATTATTCATTTACAAAAGAAAATTCTTTCGGATGTCTTGAAAACAAAGGAGAAGATAGATAGCATTGGGTTGGGAACAAATAAGATGGAGACAAGACTTAGAGGGAAAAGGGTATTCATTGTACTTGATGATGTGACCTCGTCTCAGGAATTAAAAGCCCTGTGTGGAAATCGTGCGTGGTTTGGTAAAGGAAGTGTATTAATTGTTACTACCAGAGATGTACACCTTCTTCATTTACTTGAAGTTGACCATCTCTGTAAAACAGAGGAAATGAACATAGATGACTCCCTTGAGCTTTTCAGTTGGCATACATTTCGAGAAGCATCCCCGCCAAAAGATTTTAGTCAACTCTCAAAAAAGGTAGTCGCTTACTGTGGAGGATTGCCTCTGGCACTTGAAGTCCTTGGATCTTACTTATATAGGAGGACAAAACCAGAATGGGAAAGTGTACTATCAAAATTAAAGAGAATCCCCAATGATCAAGTGCATCAAAAACTGAGAATAAGCTACAATGGTTTGGAGGATGATCTGAAAAAGGATATATTTCTTGACATATGTTTTTTCTTTATTGGCAAGGATAGAGCCTATGTTACGGAGATATTAAATGGGTGTGGGCTTTATGCTGATATTGGAATATCTGTACTCATAGAGCGGAGCCTCTTAAAAGTTGAAAAGAATAACAAGCTTCAAATGCATGATTTGATACGAGACATGGGAAGAGAAA 913 0.3812 MQKVVEFIENQSSNVCMIGIWGMGGSGKTTTAKAIYNRIHRKFGHVSFVENIREACENDYYRGIIHLQKKILSDVLKTKEKIDSIGLGTNKMETRLRGKRVFIVLDDVTSSQELKALCGNRAWFGKGSVLIVTTRDVHLLHLLEVDHLCKTEEMNIDDSLELFSWHTFREASPPKDFSQLSKKVVAYCGGLPLALEVLGSYLYRRTKPEWESVLSKLKRIPNDQVHQKLRISYNGLEDDLKKDIFLDICFFFIGKDRAYVTEILNGCGLYADIGISVLIERSLLKVEKNNKLQMHDLIRDMGRE 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28609g00001 304 Pfam NB-ARC domain 3 229 IPR002182 GO:0043531
Trme28609g00001 304 FunFam Disease resistance protein (TIR-NBS-LRR class) 155 237 - -
Trme28609g00001 304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 247 IPR027417 -
Trme28609g00001 304 PRINTS Disease resistance protein signature 95 109 - -
Trme28609g00001 304 PRINTS Disease resistance protein signature 188 202 - -
Trme28609g00001 304 PRINTS Disease resistance protein signature 17 32 - -
Trme28609g00001 304 Gene3D - 1 147 IPR027417 -
Trme28609g00001 304 Gene3D - 154 237 IPR042197 -
Trme28609g00001 304 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 304 IPR044974 GO:0006952
Trme28609g00001 304 SUPERFAMILY "Winged helix" DNA-binding domain 224 304 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28609g00001 Trme-Chr28609 1 913 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28609g00001 3 304 WRKY Transcription Factor Family AT5G45050 33.224 9.49e-50 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28609g00001 - - cam:101511388 447.203