Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28538g00001 CTTGTATCCACGCGTTCATCATCCAGTACCGGTAAAGGAAAAAATCATGAAGGGTCAATTAAGTATGGTTTCACCCTAGTGAAAGGGAAAGCGAATCATCCAATGGAGGATTACCATGTTGCCAAGTTTGTTCAGACACAGGGAAAAGAATTGGGTTTGTTTGCTATTTATGATGGCCACTTGGGGGATCGTGTGCCTTCGTATTTACAGAAACATCTATTTTCCAACATTTTAAAGGAGGATGAATTTTGGAATGACCCTGGTGCATCTATATCAAAAGCATATCTGAGTACAGATCAGACAATTCTTTCACATAGTTCTGATTTGGGGCGTGGCGGATCGACAGCTGTAACTGCAATATTAATCAACGGTCAAATTTTATGGACAGCTAATGTTGGAGATTCACGAGCAGTTCTTTCAAGAAAAGGTCAAGCAGTGCAATTGACTACAGATCATGAACCCAATACAGAGCGAGGTATCATTGAGAACAAAGGTGGTTTTGTCTCCAACTTGCCAGGTACTTAA 525 0.4076 LVSTRSSSSTGKGKNHEGSIKYGFTLVKGKANHPMEDYHVAKFVQTQGKELGLFAIYDGHLGDRVPSYLQKHLFSNILKEDEFWNDPGASISKAYLSTDQTILSHSSDLGRGGSTAVTAILINGQILWTANVGDSRAVLSRKGQAVQLTTDHEPNTERGIIENKGGFVSNLPGT 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28538g00001 174 ProSiteProfiles PPM-type phosphatase domain profile. 21 174 IPR001932 -
Trme28538g00001 174 SMART PP2C_4 17 174 IPR001932 -
Trme28538g00001 174 Gene3D - 2 173 IPR036457 -
Trme28538g00001 174 Pfam Protein phosphatase 2C 30 170 IPR001932 -
Trme28538g00001 174 SUPERFAMILY PP2C-like 19 169 IPR036457 -
Trme28538g00001 174 CDD PP2Cc 20 170 IPR001932 -
Trme28538g00001 174 PANTHER PROTEIN PHOSPHATASE 16 170 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28538g00001 Trme-Chr28538 284 1129 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28538g00001 1 173 PP2C-type Phosphatase Gene Family AT1G34750 74.566 3.21e-94 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28538g00001 K17506 - gmx:100815565 302.367