Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28488g00001 ATGGTATCAACTCCTGAACTCATTAGTGTGTTGGCTTCAATATTGGACACTGATGAGCTCGAAGTGCAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTGTGCAACAGAAGTGAACAATGTTCTGACATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTATCAATATCAGTGAATGGGACCTCAAGAGGACAAGAAAAAGCTCAGAAACTCTTGATGCTATTCCGACAGCAGCGACGAGATGATTCACCTGTTGAGACACATCAGTCTCCTCCTGAAACTAGTGATTTCTCTGTGCCACCTGCTGAAATGAAACCTCTATGTAGCACCACGTTGGTAGGTACTTGGTAG 351 0.4473 MVSTPELISVLASILDTDELEVQEQAVSCLLILCNRSEQCSDMVLQEGVIPALVSISVNGTSRGQEKAQKLLMLFRQQRRDDSPVETHQSPPETSDFSVPPAEMKPLCSTTLVGTW 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28488g00001 116 Gene3D - 1 74 IPR011989 -
Trme28488g00001 116 MobiDBLite consensus disorder prediction 79 104 - -
Trme28488g00001 116 PANTHER U BOX DOMAIN-CONTAINING 4 79 - -
Trme28488g00001 116 SUPERFAMILY ARM repeat 6 74 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28488g00001 Trme-Chr28488 68 786 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28488g00001 1 111 U-box Gene Family AT1G27910 57.851 1.93e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28488g00001 - - gmx:100794099 177.948