Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2842g00001 ATGGATAGGAATCAAAACTATATTCATGCAAGTATTCGGAAAACACTTATTTACAAATTCAAAGATGAATTAGAGGAAGGCAAATGTTACTCTTTTGAGGGTCTGGGGGTTGCAGCTAATGGTGGTGCTTATCGTACCACTCACCATAAGTATAAGCTGAATTTCCAGTACAGTTCGGTTGTTCAAAGGCTTCCCAACTTTGATATTGCTAGATCTCCCTATAAGTTTGTTTCAATTGCTGAAGTGGTAGGAGGTCTTTATGACACTGATTATTTAGTCGATGTCATTGGATTCTTGGTGAGTGTTGGACAAGAGCGTGAGATAAGCAACCAAAATGGAACAACAACAAAGCTTAATGTCATTTCGTTGGAAGCTGATGGTGCGAGGATTCAGTGTACTCTGTTTGGTCAATATGTTGACCAACTAAATACTTTTCTTGGAGCTGGTGATGTCAATAGTGCTGTGGTGATTATGCGTTTGGCTAAAGCTAAGACGTTTCAAGACAAGATACACATCCAGAACTGCATGAATTGCTCTGTTTTGATTTTTAACCCAACATGTGAGGAGAGTGTTAAGTTCAGAAAAAGGCACAATGATTCAAATGATATGCCTTCTCCCTTTACTGTGACTCAACAAAGCGTTGATTCAAGACTGCCTCCAGCTGAGGACTTTTTGGAGAATACTCCCAGGCTTACATTGCAAGGCCTAAAGGAGGTTACAAGTGATTCAGTGAATGTTGTTTTTGCCACTGTCAAGAGGATTTTGAACCCGGATAGTTTTTGGTACACCGCCTGTGTCTGTAGCAAGGCTGTGATCCCTGATTCTAAGATGTTTTATTGTGAGAAGTGTAACAAGCACGTGCAGAGGGTTATTCCCAG 878 0.4055 MDRNQNYIHASIRKTLIYKFKDELEEGKCYSFEGLGVAANGGAYRTTHHKYKLNFQYSSVVQRLPNFDIARSPYKFVSIAEVVGGLYDTDYLVDVIGFLVSVGQEREISNQNGTTTKLNVISLEADGARIQCTLFGQYVDQLNTFLGAGDVNSAVVIMRLAKAKTFQDKIHIQNCMNCSVLIFNPTCEESVKFRKRHNDSNDMPSPFTVTQQSVDSRLPPAEDFLENTPRLTLQGLKEVTSDSVNVVFATVKRILNPDSFWYTACVCSKAVIPDSKMFYCEKCNKHVQRVIP 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2842g00001 292 CDD RPA1_DBD_B_like 94 189 - -
Trme2842g00001 292 SUPERFAMILY Nucleic acid-binding proteins 74 198 IPR012340 -
Trme2842g00001 292 CDD RPA1_DBD_A_like 8 61 - -
Trme2842g00001 292 Pfam Domain of unknown function DUF223 4 92 IPR003871 -
Trme2842g00001 292 SUPERFAMILY Nucleic acid-binding proteins 232 289 IPR012340 -
Trme2842g00001 292 Gene3D - 1 63 IPR012340 -
Trme2842g00001 292 Gene3D - 67 204 IPR012340 -
Trme2842g00001 292 Gene3D - 224 292 IPR012340 -
Trme2842g00001 292 SUPERFAMILY Nucleic acid-binding proteins 2 68 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2842g00001 Trme-Chr2842 23 1517 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2842g00001 1 286 Core DNA Replication Machinery Family AT2G06510 22.333 2.78e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2842g00001 - - tpra:123915358 430.639