Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28426g00001 ATGGATGATGATGTGTTGAATATGCCGAATTGGGGTTACTATGAACCGTTCAAAGCGGGGAATCTCGGTCTAAACCTCATGCCTGGTATGAATGATCGTGAAACGAAACCATTTTTTCCTCCTGGTCGCGATCCAGCTATGCTAGTTGGTGCAAATGGAACTTTTCACCCTCGAGATAATGTTGCTGCTGTTGAGTCTTCGAATCCATTGAACTATGGAAGAGATAATTGGATCAACCAGAGACCTAGGTTTTATAATATGCAGGTCAACAATCCAAATTATGCTGTTCCTCCTGAAACATCGCAAGGACCCTCCTTTCCGTTTATCCCATCGGCTGTTACTGATCCACCAAGAAATGAGAATGTGGATGAAATTGAAGAATTAGCTGTTAAGAAGGAAGGTGGCAAGGTGAAGAAAAGGAAATCTAAGGCTGCTCCTACCACTCCGAAGGCTAAGAAACCCAGGAAGCAGAAGGATAATAGCAATGTTTCAGGTCAAGGTGTGAAACCACCGAAGAAGACGGTGGCACTTGAAATCAATGGAATTGAAATGGACATTTCTGGTCTACCTGTTCCAGTTTGTTCCTGCACTGGGAATCCTCAGCAGTGTTATCGATGGGGCTGTGGAGGTTGGCAATCTGCTTGTTGTACCACAAACGTGTCAATTTATCCTTTGCCGATGAGCGTCAAAAGGCGTGGTGCAAGGATAGCTGGGAGGAAAATGAGCCAAGGGGCATTCAAAAAGGTTTTGGAAAAGCTTGCGGCTCAAGGTTACAATTTTGCTAACCCTATTGATCTGAAGACTCACTGGGCTAGACATGGCACCAACAAGTTTGTCACTATCAGATAG 849 0.4452 MDDDVLNMPNWGYYEPFKAGNLGLNLMPGMNDRETKPFFPPGRDPAMLVGANGTFHPRDNVAAVESSNPLNYGRDNWINQRPRFYNMQVNNPNYAVPPETSQGPSFPFIPSAVTDPPRNENVDEIEELAVKKEGGKVKKRKSKAAPTTPKAKKPRKQKDNSNVSGQGVKPPKKTVALEINGIEMDISGLPVPVCSCTGNPQQCYRWGCGGWQSACCTTNVSIYPLPMSVKRRGARIAGRKMSQGAFKKVLEKLAAQGYNFANPIDLKTHWARHGTNKFVTIR 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28426g00001 282 MobiDBLite consensus disorder prediction 95 172 - -
Trme28426g00001 282 SMART GAGA_bind_2 1 282 IPR010409 -
Trme28426g00001 282 Pfam GAGA binding protein-like family 1 282 IPR010409 -
Trme28426g00001 282 MobiDBLite consensus disorder prediction 119 134 - -
Trme28426g00001 282 PANTHER - 1 282 IPR010409 -
Trme28426g00001 282 MobiDBLite consensus disorder prediction 135 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28426g00001 Trme-Chr28426 31 879 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28426g00001 1 282 BBR or BPC Transcription factor family AT2G01930 56.040 1.54e-101 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Trme28426g00001 GAGA_bind 9.4e-97 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28426g00001 - - gmx:100791533 408.297