Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28425g00001 ATGGACGACGACGACGAGATCCATTCCAATCCATCACCGTTAAGCGGATCTCCGGTGTCGTCACCGGGAGCAATTGGTAGGATTTCGGTGACGGTTGCGGCACCGGCGCCGGAATCTCATCCAGCGACGAACAGCTATGCATTAGCGCTTCCGATTCAGAATCAGGTAAGAGGAAACAACGGTGGAGGGAGGGAGGATTGTTGGAGCGAAGGCGCAACGGCGGTTCTGATCGAAGCGTGGGGAGAGAGGTATATGGAATTGAGCAGAGGGAATCTGAAGCAAAAGCATTGGAAAGAGGTGGCGGAGATCGTTAATGGAAGAGAGGATTATTTGAAAGCGCCGAAAACCGATATTCAGTGCAAAAACCGGATCGATACAGTTAAGAAGAAGTATAAATCGGAGAAAGCTAAGATCGCCGCCGGAGGTGGCGTCACAACCAGTAAATGGCCGTTTTATGACCGATTAGATCAGTTGATCGGACCAACCGCCAAGATCACCGGTAGCACATCCGCCGGTAACAGTAATTTACCACCTCAAAAAGTTCCGTTAGGTATTCCGGTCGGTCTACGCGCCGGTGGTGGTGCCAATCAGTTCAATTCTCAAAAGAAAAATCAAAGACCACAGCCACAGCCACAACCACAGCCGCAGTTGAATTACCAGAAGGTTCAGCTTCGGCCGCGAGTTGTGGCTGTGGATTCTGATAATTCATCGGAAAGAGAAGCGTTATCGCCGGTGTCAAGCGACAGTT 748 0.508 MDDDDEIHSNPSPLSGSPVSSPGAIGRISVTVAAPAPESHPATNSYALALPIQNQVRGNNGGGREDCWSEGATAVLIEAWGERYMELSRGNLKQKHWKEVAEIVNGREDYLKAPKTDIQCKNRIDTVKKKYKSEKAKIAAGGGVTTSKWPFYDRLDQLIGPTAKITGSTSAGNSNLPPQKVPLGIPVGLRAGGGANQFNSQKKNQRPQPQPQPQPQLNYQKVQLRPRVVAVDSDNSSEREALSPVSSDS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28425g00001 249 Gene3D - 68 133 - -
Trme28425g00001 249 MobiDBLite consensus disorder prediction 166 249 - -
Trme28425g00001 249 Pfam Myb/SANT-like DNA-binding domain 65 158 IPR044822 -
Trme28425g00001 249 MobiDBLite consensus disorder prediction 1 22 - -
Trme28425g00001 249 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 42 224 IPR044823 -
Trme28425g00001 249 FunFam trihelix transcription factor ASIL2 68 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28425g00001 Trme-Chr28425 454 1201 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28425g00001 1 207 Trihelix Transcription Factor Family AT3G14180 55.752 9.80e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trme28425g00001 Myb_DNA-bind_4 4e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28425g00001 - - cam:101508093 339.732