Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2841g00001 ATGCAAGTTGAACCCTTGATATCTAGGATTCGGACTTCAGGTCTCAAGGTCTTGCAGCAGCTGAAGGCTTCAAAGCAATTTCCCAATGATGAATTGAGTTCTGAACATTTGGAGAACTGTATTCAGAAACTTAAGCTTTTAGGACTTGAAGAAATCTCATCCGTCATTAAGGAAGCTATTATGGAACAACTGGATGGTGCGGGACCTGGTTCAGAGATCCTGGAAAAAATTGCTGATAGCCTGAGCCTAAGATCTAACGAGGAGGTTCTGATTGAGGCTGTGGCCCTAGAGAAGTTGAAGGAGAATGCTGAACAGACTGAAANNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCATGAGCGCCTCGTTATGCTTAAGCAAGCCCAGAGTTCCAGTCCTGTTCCAGTACCTGCTGATTTTTGTTGTCCTCTTTCTTTAGAGTTGATGACTGATCCGGTGATCGTGGCTTCAGGGCAAACTTATGAGCGGGCTTTTATCAAGAACTGGATTGATCTTGGTCTTACTGTTTGTCCAAAGACACATCAGACTCTGGCTCACACCAACCTAATACCTAACTACACTGTAAAGGCACTAATTGCAAACTGGTGTGAATCAAACAATGTGAAACTGGTTGATCCCACAAAATCAACAACCTTAAATCAAGCATCGATCCTTCATGGGTATATGGAGTCTGGTACAACCAGGGAATCTCCTCTTTTTCCTCATTCCAGGAGTAACCTGCCATCCTCACCTGAGTCCGCTCGTTCTCGTTCTTTTAGTTCGCCAGGTAATAACATACCTTCTTCAGGTGGAATCCAGCGAGAGGGAACATCACCTGTGCACCCTCGTTCAACTTCAGAAGGTTCCTTGAGTGGCATAATTAACGAGCAATATATGGATGCTGCTAGAACATCACCCACGGCTTTAGACGACAGGTCTGCTAGCTCAGATGAAAGCAGTGTCGATTCAATTGGCCAACCATCAATATCACCATCTAGAAGAGAATCTTCCGGTGCCTTCAGCTCCGAACTATCTCAAAACCATGTTAGAGCTGTATCTGATTCTGGTGCATTTTCTGATGCAAATTATCAAGAAACACAAGGTGATGACAGCAATGCTTCTCAGCTGTCAACAAGTCCAGGCTACAGTAGAGATACTTCTGGCGAATTAAATCCAGGGCTAGATGCTGCTGGTTCTGCTCCCATGCCATCAATGCAGAGAGAACCTGACTTCCCACCCCGATTGATGGAGGCAAGGTCTCGAAGCCAAGCTATATGGAGGAGGCCATCAGAAAGGCTTGTTCCTAGGATAATATCTTCTGCTATTGAACCAAGAGTTGATCTTTCTGGTATTGAGGCACAGGTTCGGAGTTTAGTTGAGGGCTTGAGGAGCATTGATCTTGATATTCAGAGAGAGGCAACTACAGAAATCCGTCTTCTTGCTAAACACAATATGGATAATCGAATTGCAATTGCAAATTGTGGAGCCATTAACATATTAGTCGACTTACTTAAGTCAGATGATTCAAGGATCCAGGAAAATGCTGTTACAGCACTTCTTAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAATGCCGGTGCAATTGAACCTCTGATTCATGTTCTTGAGAACGGGAGCCCAGAAGCGAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTGTCGGTGATTGAGGAAAACAAGGTTAACATAGGGAGATCTGGGGCAATTAGACCACTTGTAGATTTATTAGGGAATGGAACTCCGAGGGGAAAAAAGGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCACGAGAACAAGAATCGGATTGTGCAAGCTGGTGCCGTAAAGCACCTTGTGGAGTTAATGGACCCAGCGGCTGGAATGGTTGACAAGGCTGTGGCTGTCTTAGCAAACCTTGCCACAATTCCAGAAGGAAGAATTGCAATTGGCCAGGAAGGTGGGATTCCTGTTCTAGTTGAAGTTGTTGAGTTGGGTTCTGCTAGAGGAAAGGAGAACGCAGCAGCAGCTCTTCTACATCTTTGTTTACACAGTAGTAGATTCTTAAGCATGGTGCTCCAACACGGAGCCGTACCACCATTAGTAGCTTTATCACAGTCAGGCACACCAAGGGCCAAAGAAAAGGTGTGGCTCAAGCTCTCCTTAATCAATTTAGAAGTCAAAGACATGGGAATTCTGGGAGGGGCTGATCTTGA 2249 0.4344 MQVEPLISRIRTSGLKVLQQLKASKQFPNDELSSEHLENCIQKLKLLGLEEISSVIKEAIMEQLDGAGPGSEILEKIADSLSLRSNEEVLIEAVALEKLKENAEQTEXXXXXXXXXXXXXXXXXXHERLVMLKQAQSSSPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQTLAHTNLIPNYTVKALIANWCESNNVKLVDPTKSTTLNQASILHGYMESGTTRESPLFPHSRSNLPSSPESARSRSFSSPGNNIPSSGGIQREGTSPVHPRSTSEGSLSGIINEQYMDAARTSPTALDDRSASSDESSVDSIGQPSISPSRRESSGAFSSELSQNHVRAVSDSGAFSDANYQETQGDDSNASQLSTSPGYSRDTSGELNPGLDAAGSAPMPSMQREPDFPPRLMEARSRSQAIWRRPSERLVPRIISSAIEPRVDLSGIEAQVRSLVEGLRSIDLDIQREATTEIRLLAKHNMDNRIAIANCGAINILVDLLKSDDSRIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLENGSPEAKENSAATLFSLSVIEENKVNIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRIAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSSRFLSMVLQHGAVPPLVALSQSGTPRAKEKVWLKLSLINLEVKDMGILGGADL 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2841g00001 749 MobiDBLite consensus disorder prediction 234 425 - -
Trme2841g00001 749 MobiDBLite consensus disorder prediction 234 393 - -
Trme2841g00001 749 Gene3D - 447 737 IPR011989 -
Trme2841g00001 749 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 223 IPR013083 -
Trme2841g00001 749 ProSiteProfiles U-box domain profile. 142 216 IPR003613 GO:0004842|GO:0016567
Trme2841g00001 749 Pfam Armadillo/beta-catenin-like repeat 493 530 IPR000225 GO:0005515
Trme2841g00001 749 Pfam Armadillo/beta-catenin-like repeat 575 612 IPR000225 GO:0005515
Trme2841g00001 749 Pfam Armadillo/beta-catenin-like repeat 532 571 IPR000225 GO:0005515
Trme2841g00001 749 SUPERFAMILY RING/U-box 134 220 - -
Trme2841g00001 749 SMART arm_5 573 613 IPR000225 GO:0005515
Trme2841g00001 749 SMART arm_5 654 694 IPR000225 GO:0005515
Trme2841g00001 749 SMART arm_5 445 489 IPR000225 GO:0005515
Trme2841g00001 749 SMART arm_5 614 653 IPR000225 GO:0005515
Trme2841g00001 749 SMART arm_5 532 572 IPR000225 GO:0005515
Trme2841g00001 749 SMART arm_5 491 531 IPR000225 GO:0005515
Trme2841g00001 749 FunFam RING-type E3 ubiquitin transferase 446 739 - -
Trme2841g00001 749 Coils Coil 86 107 - -
Trme2841g00001 749 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 584 626 IPR000225 GO:0005515
Trme2841g00001 749 Pfam U-box domain 143 213 IPR003613 GO:0004842|GO:0016567
Trme2841g00001 749 CDD RING-Ubox_PUB 144 196 IPR045210 -
Trme2841g00001 749 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 502 544 IPR000225 GO:0005515
Trme2841g00001 749 PANTHER U BOX DOMAIN-CONTAINING 18 726 - -
Trme2841g00001 749 FunFam RING-type E3 ubiquitin transferase 142 217 - -
Trme2841g00001 749 SUPERFAMILY ARM repeat 462 734 IPR016024 -
Trme2841g00001 749 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 625 666 IPR000225 GO:0005515
Trme2841g00001 749 SMART Ubox_2 146 209 IPR003613 GO:0004842|GO:0016567
Trme2841g00001 749 Coils Coil 126 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2841g00001 Trme-Chr2841 1 2445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2841g00001 126 734 U-box Gene Family AT2G23140 61.102 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2841g00001 - - tpra:123913325 1303.5