Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28404g00001 GTCAAATTGTTTGAATCTGCCCATGCTCATGAGTCGGAGCTCAGGAAAGAGGTTGAGGTTGCACTTAGAGATACTGTACTAGAACAACAAAAGCTCTTAGAAGAGAGTGAACATATTTCGGGAGAGCTACAAATGACCATGAGAAATGTGGCCCTACTAGATAGTCGTGCGAAGGAAACAGCCCGTAGGCGAGATGAAGCTGCACACGAGCTCTTGCTAATTCAAACATCCATATCAACCTTGTGGCAAGAAAGGCAGCAGATCAGGAGGCAGAAAATGGAAGCCCTCCGCTGGCTTGAACGGTGGAAAAGTCGTGGACAAATCGGAGCAGCTCATTACAATGGAGTCATTGGGTTTGCTGAAGAACTGCCTGAGTTAGCAGAATTCTCTTTATCGGATATTGAAAATGCTACATCCTGGTCAATTGTATATGAGTACCTTCCGAATGGAACTCTTCAAAACTACCTATTTCGAAAAAGTAACATTATCCCTTTGACATGGAATATCAGAACACGGATGATTGCCGAAATTTCCAGTGCACTTTGTTTCTTACATTCGTTTAAACCGGAAGCTATTATCCATGGGGATCTTAAGCCTGAGACTATACTTCTTGATTCTTCACTTAGTTGCAAGATATGTGAATTCAGGTTCAGTAGGCTTGGGACAGAGGAGTCTCTCTATAGTCCTAGTAGTAGTTTCCACTTGAGCACTGAGCCAAAGGGTGCTTTCACATATACGGATCCCGAGTTTCAGCGAACTGGGGTACTAACAACCAAGTC 779 0.4365 VKLFESAHAHESELRKEVEVALRDTVLEQQKLLEESEHISGELQMTMRNVALLDSRAKETARRRDEAAHELLLIQTSISTLWQERQQIRRQKMEALRWLERWKSRGQIGAAHYNGVIGFAEELPELAEFSLSDIENATSWSIVYEYLPNGTLQNYLFRKSNIIPLTWNIRTRMIAEISSALCFLHSFKPEAIIHGDLKPETILLDSSLSCKICEFRFSRLGTEESLYSPSSSFHLSTEPKGAFTYTDPEFQRTGVLTTKS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28404g00001 260 Gene3D Transferase(Phosphotransferase) domain 1 118 260 - -
Trme28404g00001 260 ProSiteProfiles Protein kinase domain profile. 1 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28404g00001 260 PANTHER OS02G0152300 PROTEIN 139 260 - -
Trme28404g00001 260 Pfam Protein tyrosine and serine/threonine kinase 137 260 IPR001245 GO:0004672|GO:0006468
Trme28404g00001 260 SUPERFAMILY Protein kinase-like (PK-like) 138 260 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28404g00001 Trme-Chr28404 72 1201 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28404g00001 1 260 U-box Gene Family AT2G45910 29.283 1.10e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trme28404g00001 PK_Tyr_Ser-Thr 4.6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28404g00001 - - gmx:100788846 332.413