Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28398g00001 GTTAGTAACGAAGCTATTAGAGAAGAACTCCAGGCACGGAATCCATATGATTCTGAAGTTGTTATGTATTGTGAGGAAACATGGAATAAAGGCAACATAAAGGTAAATAGAAGCATTGGTTATGCTCATTTTAAGGACCATCCGATCAATTCATTGCGAAGGTTACCAGAAATTGAACAGATAACTCAAGTTTTAGTATCTGCAAAACCTGAATTACATTCAAGAAAAATTAGAAAGGGTGATAGGTTTCTCATACTTGCATCTCATGGATTTTGGAATTTCATGACCAATGAGAATGCAGCTAATATTGTAAACCGCAATCCCCGAGATGAAATTGCAAAAAGACTTTTGAGTGCTGCTCTAGAAAAGGCAACTGAAAAAAGAGGAGCGAAGGGTGTTTATGATGATATGATTATCATTGTTTTATTCTTCAGCGAAGGGTTGTCACAGAGGAAAGAGGAAGACACACCAAAGACGGTAGTGTTACATGAAGGGCCATCATATTTGAGTAATATAATCATGGCATCAGGAAAATCCGACCAATCTCGTCTGAGTCCCACTTCATCTATTCCAAATCCACGAGCTAGTGTGCCTACACTTACTCAAGTAAGTTGA 615 0.3805 VSNEAIREELQARNPYDSEVVMYCEETWNKGNIKVNRSIGYAHFKDHPINSLRRLPEIEQITQVLVSAKPELHSRKIRKGDRFLILASHGFWNFMTNENAANIVNRNPRDEIAKRLLSAALEKATEKRGAKGVYDDMIIIVLFFSEGLSQRKEEDTPKTVVLHEGPSYLSNIIMASGKSDQSRLSPTSSIPNPRASVPTLTQVS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28398g00001 204 ProSiteProfiles PPM-type phosphatase domain profile. 1 144 IPR001932 -
Trme28398g00001 204 MobiDBLite consensus disorder prediction 179 204 - -
Trme28398g00001 204 PANTHER PROTEIN PHOSPHATASE 21 142 IPR015655 GO:0004722|GO:0006470
Trme28398g00001 204 Pfam Protein phosphatase 2C 30 127 IPR001932 -
Trme28398g00001 204 Gene3D - 1 156 IPR036457 -
Trme28398g00001 204 SUPERFAMILY PP2C-like 27 145 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28398g00001 Trme-Chr28398 1 959 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28398g00001 1 184 PP2C-type Phosphatase Gene Family AT4G33920 34.314 9.50e-25 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28398g00001 - K01102 qsa:O6P43_010354 104.375