Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28357g00001 ATGATTCGACTAGCGACAAACAAATTCTCTGATGATAACAAGATTGGAGAAGGTGGTTTCGGCGATGTTTATAAGGGAATGTTTCCTAATGGATTTGAAATAGCAGTGAAGAGGCTCATAAGAAATTCAAGTCAAGGAGCTTTGGAATTTAAGAATGAAGTGTTACTAATAGCCAAACTTCAACACAGAAATCTTGTGAGACTGTTAGGATTTTGCATTCAAAGGAATGAAAAGATACTAATTTATGAATATATGCACAACAAAAGCCTTGATTATTACCTATTCAGCCCTGAAAACCATAAAAAGTTAACTTGGCATGCACGTTACAAGATTATAAGAGGAATTGCGCGAGGTATTCTTTATCTCCATGAAGATTCTCATCTAAAAATCATACACTGTGATCTTAAACCCAGCAACATTTTGTTGGATGACAAAATGAATGCAAAGATATCAGATTTTGGGTTGGCAAGGATTGTTGCCATTGATCAAATGCAAGGAAATACTAGTATAATTGCTGGAACATACTTTGGAGTTATAATTCTTGAGATTGTCAGTGGAAAAAGAAACATCGATTATAATGGAGTAAATTCCATTGATGACCTCGTGAGCCAT 612 0.348 MIRLATNKFSDDNKIGEGGFGDVYKGMFPNGFEIAVKRLIRNSSQGALEFKNEVLLIAKLQHRNLVRLLGFCIQRNEKILIYEYMHNKSLDYYLFSPENHKKLTWHARYKIIRGIARGILYLHEDSHLKIIHCDLKPSNILLDDKMNAKISDFGLARIVAIDQMQGNTSIIAGTYFGVIILEIVSGKRNIDYNGVNSIDDLVSH 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28357g00001 204 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Trme28357g00001 204 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 175 - -
Trme28357g00001 204 SMART serkin_6 9 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28357g00001 204 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Trme28357g00001 204 SUPERFAMILY Protein kinase-like (PK-like) 2 192 IPR011009 -
Trme28357g00001 204 ProSiteProfiles Protein kinase domain profile. 9 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28357g00001 204 ProSitePatterns Protein kinases ATP-binding region signature. 15 37 IPR017441 GO:0005524
Trme28357g00001 204 Pfam Protein kinase domain 10 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28357g00001 204 Gene3D Transferase(Phosphotransferase) domain 1 85 176 - -
Trme28357g00001 204 FunFam Os07g0541700 protein 85 174 - -
Trme28357g00001 204 FunFam Cysteine-rich receptor-like protein kinase 10 1 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28357g00001 Trme-Chr28357 28 1016 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28357g00001 1 204 Receptor kinase-like Gene Family AT4G23230 59.556 2.42e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme28357g00001 Pkinase 8.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28357g00001 - - mtr:11443024 392.889