Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28321g00001 AAGGGAAAGAAAGTTGATTATTATGCCCAGCTAGACAGGTCTAAAACTGCTGTCAAGACAAAACATGTACCGAATCATTCTGGGCACGTGCAGTTGAAAAAGAAAATTGGAAATGCTACTTCTGATTGCATGGGTGAATTAGTAAGACGGGAGAATAATTCTCTAGACCCTAAACATAAATACTTTAAAAGCGTCCCAAAATCACATGGTGTAAATGTTCCTCCTCTTGGTCGTAGTAATTTCAGTGGTCATGAGAATGACTCAATGGCNCGAAATAAAGTGAGGAATGCATTGCGCCTGTTCCAAGCTGTTTCTAGAAAGCTTTTGCAGGAAGCGGAATCAAAAGCAAAGTCAAACGAGAAAGAAAGAAGGAGGTTTGATTTACAAGCTGCGAAAATACTTAAGGAGAAAGGGAACTATGTTAACGAAGGGGATAAGATCTTGGGATCTGTCCCCGGGGTTGAAGTCGGTGATGAATTTCAATACAGAATAGAGCTTAATGTAATTGGCCTTCATCGCCAGATTCAGGGTGGTATAGATTATGTGAAGCAGAAAAATAAAGTCCTTGCAACTAGTATTGTTGCGTCAGGGGGCTATTCTGATGAATTAGATAATACAGATGTTTTGATATATACAGGGCAGGGTGGAAATGTGATGAGCAGTGATAAAGACCCAGAAGATCAGAAGCTTGAAAGGGGCAATCTTGCTTTGAAGAACAGCAGTGAGGAAAAGAATCCTGTTAGGGTGATACGGGGTTCGGAATCAATGGATGGAAAAAGCAAGATATATGTTTATGATGGACTTTATCTAGTTGAGTCATGTTGGCAGGAAATGGGGTCACATGGGAAGCTGGTTTATAAGTTTCGCTTGCGAAGAATCCCAGGTCAACCAGAGCTTGCCTTGAAGGAACTGAAGAAATCTAAAAAGTTCAAAATAAGAGAAGGTCAATGCGTCAAAGATATTTCCTACGGTAAAGAGAGAATCCCCATATGTGCTAAGGCTGTGGTTGTACTAATGGATGCTCTGACCATGCAAAATGTTCCTGTGTACTAA 1053 0.4055 KGKKVDYYAQLDRSKTAVKTKHVPNHSGHVQLKKKIGNATSDCMGELVRRENNSLDPKHKYFKSVPKSHGVNVPPLGRSNFSGHENDSMARNKVRNALRLFQAVSRKLLQEAESKAKSNEKERRRFDLQAAKILKEKGNYVNEGDKILGSVPGVEVGDEFQYRIELNVIGLHRQIQGGIDYVKQKNKVLATSIVASGGYSDELDNTDVLIYTGQGGNVMSSDKDPEDQKLERGNLALKNSSEEKNPVRVIRGSESMDGKSKIYVYDGLYLVESCWQEMGSHGKLVYKFRLRRIPGQPELALKELKKSKKFKIREGQCVKDISYGKERIPICAKAVVVLMDALTMQNVPVY 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28321g00001 350 Coils Coil 109 129 - -
Trme28321g00001 350 Gene3D - 130 315 IPR036987 -
Trme28321g00001 350 MobiDBLite consensus disorder prediction 62 86 - -
Trme28321g00001 350 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 130 309 - -
Trme28321g00001 350 ProSiteProfiles YDG domain profile. 149 292 IPR003105 -
Trme28321g00001 350 SUPERFAMILY PUA domain-like 133 304 IPR015947 -
Trme28321g00001 350 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 56 334 - -
Trme28321g00001 350 SMART G9a_1 144 296 IPR003105 -
Trme28321g00001 350 Pfam SAD/SRA domain 148 296 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28321g00001 Trme-Chr28321 2 1142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28321g00001 91 350 Su(var)3-9 homologs AT5G04940 39.925 5.72e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28321g00001 K11420 - tpra:123908193 570.081