Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28302g00001 ATGTCGAGCGGAAGAAAAGGCAAAGGTCGTCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAATCTGCAAGTGACTTTCTCAAAGCGCCGTAGCGGTCTTTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGT 138 0.4565 MSSGRKGKGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLC 46
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28302g00001 46 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 46 IPR002100 GO:0003677|GO:0046983
Trme28302g00001 46 MobiDBLite consensus disorder prediction 1 20 - -
Trme28302g00001 46 SUPERFAMILY SRF-like 8 46 IPR036879 GO:0003677|GO:0046983
Trme28302g00001 46 SMART madsneu2 8 46 IPR002100 GO:0003677|GO:0046983
Trme28302g00001 46 Gene3D - 20 46 IPR036879 GO:0003677|GO:0046983
Trme28302g00001 46 ProSiteProfiles MADS-box domain profile. 8 46 IPR002100 GO:0003677|GO:0046983
Trme28302g00001 46 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Trme28302g00001 46 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Trme28302g00001 46 PRINTS MADS domain signature 45 46 IPR002100 GO:0003677|GO:0046983
Trme28302g00001 46 PANTHER MADS BOX PROTEIN 10 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28302g00001 Trme-Chr28302 1 138 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28302g00001 5 46 Type I MADS-box Gene Family AT5G60440 90.476 1.81e-20 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme28302g00001 SRF-TF 2.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28302g00001 - - mtr:11438274 91.6633