Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28298g00001 AAATGGACATTGATGTCGTTTCATAAACTGGGTTTTGGCGAAGACGAGGTCTTGAATTGCCTTGATGAAGATAATGTCATAGGATGTGGATCGTCCGGGAAAGTCTACAAGGTTGTGCTTCGCAACGGAGAGTCTGTCGCCGTGAAGAAGATATGGGGCGGGGTCAGAGTAGAATCGGAGAGTGGAGATATTGAAAAGAATCAATTTCAAGACAATGCTTTTGATGCAGAGGTGGAAACTTTGGGAAAGATTAGGCACAAGAACATTGTCAAGCTATGGTGTTGCTGCACCACAAGGGATTGCAAGCTATTGGTTTACGAGTATATGCCAAATGGTAGTCTTGGTGATATGCTTCATAGCAGTAAAGGAGGATTGTTGGATTGGCCAACTAGGTATAAGATAGCTCTTGATGCTGCAGAAGGTCTCTCTTATCTGCATCATGACTGTGTTCCTCCTATTGTTCATAGAGATGTGAAATCTAATAACATCTTGTTGGACGAAGAGTTTGGCGCAAGGGTTGCAGATTTTGGGGTAGCTAAGGTGGTCGAATCCAATGGGAAAGGAACTAAATCCATGTCAGTCATAGCTGGCTCTTGTGGGTATATTGCACCAGAATATGCATACACACTTAGAGTGAATGAGAAGAGTGACATATATAGTTTTGGTGTTGTTATCCTTGAGTTAGTCACTGGAAGGAAGCCAGT 704 0.429 KWTLMSFHKLGFGEDEVLNCLDEDNVIGCGSSGKVYKVVLRNGESVAVKKIWGGVRVESESGDIEKNQFQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDMLHSSKGGLLDWPTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDEEFGARVADFGVAKVVESNGKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRKPV 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28298g00001 235 Gene3D Phosphorylase Kinase; domain 1 7 108 - -
Trme28298g00001 235 Pfam Protein kinase domain 23 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28298g00001 235 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 109 235 - -
Trme28298g00001 235 Gene3D Transferase(Phosphotransferase) domain 1 109 235 - -
Trme28298g00001 235 FunFam Receptor-like protein kinase HSL1 5 108 - -
Trme28298g00001 235 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Trme28298g00001 235 ProSiteProfiles Protein kinase domain profile. 21 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28298g00001 235 SMART serkin_6 21 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28298g00001 235 SUPERFAMILY Protein kinase-like (PK-like) 18 234 IPR011009 -
Trme28298g00001 235 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Trme28298g00001 235 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 19 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28298g00001 Trme-Chr28298 1 1203 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28298g00001 1 235 Receptor kinase-like Gene Family AT1G28440 78.571 4.22e-129 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme28298g00001 Pkinase 9.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28298g00001 - - jre:108983249 436.417