Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28289g00001 GCATTTCAACTGCATGGAGAAATTGAGGAAGGGAATGTGATGCTTGATAGAGACACAGGAAAATCGGCTCAATTCACATTGAGTGCACCAAGCAAGTTTTTTAATGGAGTATGTAGGTTAGATGATGAGACCAGAAGAATCAGAAGTGCTCCTGATCTTTCCGAGAGAAATCTTTATATTGGAAACTTATCACGAGAAGTAACAAGGGAAATGCTGCTCAACTATTTTGAGAGGCACGGTGATATAGAGGAATGTTTAGTTATATGTCAACGTCACAAGCATTCAAATGTATCAAGTTTTTCTGGCATCGTTACATACAAGACAGCAGAGGCAGCAAAGAAAGCGATATGTGACCTAGATCAAAAGACTATCGGGAGTTTGTGA 384 0.3958 AFQLHGEIEEGNVMLDRDTGKSAQFTLSAPSKFFNGVCRLDDETRRIRSAPDLSERNLYIGNLSREVTREMLLNYFERHGDIEECLVICQRHKHSNVSSFSGIVTYKTAEAAKKAICDLDQKTIGSL 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28289g00001 127 Gene3D - 35 126 IPR012677 -
Trme28289g00001 127 SMART rrm1_1 57 127 IPR000504 GO:0003723
Trme28289g00001 127 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 126 IPR000504 GO:0003723
Trme28289g00001 127 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 124 - -
Trme28289g00001 127 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 127 IPR000504 GO:0003723
Trme28289g00001 127 SUPERFAMILY RNA-binding domain, RBD 49 125 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28289g00001 45 124 Eukaryotic Initiation Factors Gene Family AT1G49760 35.802 3.42e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28289g00001 K12741 - gmx:100776344 114.005