Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28285g00001 GACTTGGATGACATGAACATCGAAATAATGAGGAACACTCTTTACAAGGCATACCTTGAAGATTTTTACAGATTTTGTCAGAAACTTGGTGGTGCTACTGCTGAGATAATGTCTGACCTTCTTGCTTTTGAGGCTGATAGAAGGGCTGTCAATATTACCATAAACAGTATTGGTACTGAGCTTACCCGAGATGACCGTAGGAAATTGTACTCTAACTTCGGTTTGTTGTAA 231 0.3939 DLDDMNIEIMRNTLYKAYLEDFYRFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLL 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28285g00001 76 Pfam ATP synthase (C/AC39) subunit 2 75 IPR002843 GO:0046961
Trme28285g00001 76 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT AC39 1 76 IPR016727 GO:0033179|GO:0046961|GO:1902600
Trme28285g00001 76 SUPERFAMILY V-type ATP synthase subunit C 3 76 IPR036079 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28285g00001 Trme-Chr28285 95 512 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28285g00001 1 76 Primary Pumps ATPases(2) AT3G28710 96.053 4.86e-48 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28285g00001 K02146 - gmx:100800553 153.68