Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28272g00001 ATGAATGGTTATGGTACTACTACTACTAGCAGTAGTAATTTCGGTGTAACGAATAGTGGAGTTTTGGTTAGTTCTAGGGATGGATTTCCTGATTCGAACTTGCTTAGTAAGAGTGAGTCGGTACTGCAATTTGAGAGGGGTGTGGAGGAAGCTAATAAGTTTCTGCCGAAAGCGAATCCCTTGGTTATTGACCTGGAGAATAACCACCCTTTTATCCCTTCTTTTAGGAAGGTTCCTCGAGAGGTGGTAGTTAAGACGGAGAGTAGTGAAAGAGAGCATTTTTCTGTTGAGTCGAGAGGGAGGAAGAATCACGAACGGGGAGATGAAACGGATTTACAAGATGAGAGAAGCAACAAGCAGTCGGCTGTTTACACTGATGACAGTGAAATATCGGAGCTGTTTGATAAGGTGTTGCTTGGCACAGGGTGCAGAAAGGATGGAGCTCCTAAGGAAGAGAAGCCTAATGAACAAGTTACGGGTGTGCAGCAGAAAGAAGAAGCGAACAATTCTGGTGGTGGAAAGAGTCGTGCTAAGAAACAAGGAAACAAGAAGGGTGTTGTGGATTTGAGGACAATGTTGATTCTGTGTGCACAATCTATTTCTTCTGATGATCGTGCAACTGCTAAGGAGTTATTAAAGCAGATAAGGCAACATTCTTCTCCACTTGGTGATGGATCTCAGAGGCTGGCACATTGCTTTGCAAATGCCATTGAAGCACGCTTGGCTGGCACTGGTACTCAGATTTATACTGCTTTATACTCCAAAAGAAACTCTGCTGCTGACATGGTGAAAGCTTATCAAATGTATATTTCAGCTTGTCCGTTCAAGAAGCTTGCTATCATTTTTGCAAACCATACAATTTTGAATCTAGCCAAGGAAGTAGAAACTCTTCACATTGTAGATTTTGGCATCCGTTATGGCTTCCAATGGCCTGCCCTTATTTATCGTCTATCCAAACGACCTGGTGGACCTCCCAAACTGCGTTTGACAGGGATAGAGCTCCCTCAACCTGGCTTCAGGCCTGCAGAGAGAGTCCAGGAGACAGGGCTTCGCCTGGCAAG 1061 0.4449 MNGYGTTTTSSSNFGVTNSGVLVSSRDGFPDSNLLSKSESVLQFERGVEEANKFLPKANPLVIDLENNHPFIPSFRKVPREVVVKTESSEREHFSVESRGRKNHERGDETDLQDERSNKQSAVYTDDSEISELFDKVLLGTGCRKDGAPKEEKPNEQVTGVQQKEEANNSGGGKSRAKKQGNKKGVVDLRTMLILCAQSISSDDRATAKELLKQIRQHSSPLGDGSQRLAHCFANAIEARLAGTGTQIYTALYSKRNSAADMVKAYQMYISACPFKKLAIIFANHTILNLAKEVETLHIVDFGIRYGFQWPALIYRLSKRPGGPPKLRLTGIELPQPGFRPAERVQETGLRLA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28272g00001 353 MobiDBLite consensus disorder prediction 145 183 - -
Trme28272g00001 353 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 129 353 IPR005202 -
Trme28272g00001 353 MobiDBLite consensus disorder prediction 160 176 - -
Trme28272g00001 353 ProSiteProfiles GRAS family profile. 180 353 IPR005202 -
Trme28272g00001 353 MobiDBLite consensus disorder prediction 145 159 - -
Trme28272g00001 353 Pfam GRAS domain family 189 353 IPR005202 -
Trme28272g00001 353 MobiDBLite consensus disorder prediction 86 127 - -
Trme28272g00001 353 MobiDBLite consensus disorder prediction 86 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28272g00001 Trme-Chr28272 40 1100 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28272g00001 18 353 GRAS Transcription Factor Family AT1G07530 54.416 1.45e-117 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme28272g00001 GRAS 1.6e-46 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28272g00001 - - mtr:11422027 569.311