Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28264g00001 GCTCAGCCGAGGCAGAAAGTCAGGGCTAGGAGAGGTCAAGCAACCGACCCACACAGCATTGCTGAGAGGTTGCGGAGGGAAAGAATTGCTGAGAGAATGAAAGCATTGCAAGAACTTGTTCCTAATGCCAACAAGACAGACAAGGCCTCCATGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGGTTCAAGTCAAG 201 0.4925 AQPRQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVK 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28264g00001 67 Gene3D - 7 67 IPR036638 GO:0046983
Trme28264g00001 67 SMART finulus 19 67 IPR011598 GO:0046983
Trme28264g00001 67 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 66 IPR036638 GO:0046983
Trme28264g00001 67 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 62 IPR011598 GO:0046983
Trme28264g00001 67 FunFam Transcription factor bHLH66 10 67 - -
Trme28264g00001 67 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 67 - -
Trme28264g00001 67 Pfam Helix-loop-helix DNA-binding domain 18 63 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28264g00001 Trme-Chr28264 336 1203 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28264g00001 2 67 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 92.424 1.31e-36 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme28264g00001 HLH 3.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28264g00001 - - psat:127138414 122.094