Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28263g00001 ATGAAGGAATCATTATCATTATCCTGCCTAAACAATGAGTCATTACAAGTCTCATCCAATACAAATAATACACAAGTGATCAATGAGACACAAACAACGACAACGTCATCACCACGGCCGCCACCGCAGACGATTAAAGAAAGTAAGAAAAGTCCTTTTAGAGGAGTAAGAACAAGGCCATGGGGGAAATTCGCGGCAGAGATAAGGGACTCAACAAGAAAAGGGGCTAGAGTATGGCTTGGAACATTCGACACTGCCGAAGCAGCTGCTTTAGCTTACGATCAAGCTGCTTTTTCGACAAGAGGTTCATCGGCAGTGTTGAATTTTCCAGAGGCAGTAGTTAAAGCATCACTCAAAGAAATGGCTAAAAATTGTAAGCCTTTGGAAGAAGGTACTTCCCCAGTGTTGGCAATCAAGAGCAAACACACCATGAGAAAAAAATCCAATAAG 450 0.4222 MKESLSLSCLNNESLQVSSNTNNTQVINETQTTTTSSPRPPPQTIKESKKSPFRGVRTRPWGKFAAEIRDSTRKGARVWLGTFDTAEAAALAYDQAAFSTRGSSAVLNFPEAVVKASLKEMAKNCKPLEEGTSPVLAIKSKHTMRKKSNK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28263g00001 150 ProSiteProfiles AP2/ERF domain profile. 52 110 IPR001471 GO:0003700|GO:0006355
Trme28263g00001 150 FunFam Ethylene-responsive transcription factor 2 51 111 - -
Trme28263g00001 150 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Trme28263g00001 150 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Trme28263g00001 150 MobiDBLite consensus disorder prediction 1 59 - -
Trme28263g00001 150 Pfam AP2 domain 53 102 IPR001471 GO:0003700|GO:0006355
Trme28263g00001 150 Gene3D AP2/ERF domain 52 112 IPR036955 GO:0003700|GO:0006355
Trme28263g00001 150 PANTHER DNA-BINDING DOMAIN 25 122 IPR044808 GO:0003700|GO:0009873
Trme28263g00001 150 SMART rav1_2 52 116 IPR001471 GO:0003700|GO:0006355
Trme28263g00001 150 MobiDBLite consensus disorder prediction 1 44 - -
Trme28263g00001 150 SUPERFAMILY DNA-binding domain 52 111 IPR016177 GO:0003677
Trme28263g00001 150 CDD AP2 53 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28263g00001 Trme-Chr28263 299 748 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28263g00001 31 147 AP2-EREBP Transcription Factor Family AT3G23240 58.824 8.28e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme28263g00001 AP2 7.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28263g00001 K14516 - gmx:100780775 162.155