Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28260g00001 TCTGAGTTGTCTATAATTGGTAGCCTTAGACACCGGAATCTTGTTAGACTTCAAGGATGGTGTCATGAGAAAGGTGAGATTTTGTTGGTGTATGATTTGATGCCTAACGGTAGTTTGGATAAGGCTTTGTTCGAGGCTAGGACGCCTCTTCCTTGGTCTCACCGTCGCAAGATTTTGTTAGGTGTTGCATCTGCTTTGGCTTACTTGCATCAAGAGTGTGAAAATCAGGTAATTCATAGAGACATTAAGACCAGTAACATAATGTTAGATGAAGGTTTTAATGCGCGTTTGGGAGATTTTGGATTAGCAAGACAAACTGAGCATGACAAGTCTCCGGATGCCACCGTGGCTGCTGGAACAATGGGATATCTAGCACCTGAGTATCTTCTCACAGGTAAAGCCACTGAGAAAACCGACGTGTTCAGCTATGGTGCTGTGGTTCTTGAGGTGGCAAGTGGGAGGAGACCTATAGAGAGAGWTGCTGCCGGTGTTGGTAAAGTTGGTGTGAGTAGCAATTTGGTGGAATGGGTTTGGAGTTTGCACCGGGAAGGAAGGTTGTTAATGGCAGCAGATCCAAGGCTCGAGGGTGAGTTCGATGAAGGGGAGATGAGAAGGGTACTCTTGGTTGGGCTAGCTTGCTCACAACCTGATCCATTGGCTAGACCAACAATGAGAGGTGTGGTTCAGATGCTAGGGGGTGAAACGGAAGTACCTATTGTCCCAAGAACGAAGCCTTCTACAGGTCTCAGTACTTCGCACTCTCACCTCTTACTGAGCTTGCAAGATAGTGTATCTGACTGTGATGATGGTATAATCACCATTTCTACCTCCACATCAGCGAACAGCTTCAATGGTGGAGATATAGTCTGA 870 0.4621 SELSIIGSLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALFEARTPLPWSHRRKILLGVASALAYLHQECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYLLTGKATEKTDVFSYGAVVLEVASGRRPIERXAAGVGKVGVSSNLVEWVWSLHREGRLLMAADPRLEGEFDEGEMRRVLLVGLACSQPDPLARPTMRGVVQMLGGETEVPIVPRTKPSTGLSTSHSHLLLSLQDSVSDCDDGIITISTSTSANSFNGGDIV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28260g00001 289 PANTHER - 1 241 - -
Trme28260g00001 289 SUPERFAMILY Protein kinase-like (PK-like) 2 252 IPR011009 -
Trme28260g00001 289 SMART serkin_6 1 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28260g00001 289 Gene3D Phosphorylase Kinase; domain 1 1 34 - -
Trme28260g00001 289 ProSiteProfiles Protein kinase domain profile. 1 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28260g00001 289 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
Trme28260g00001 289 Pfam Protein kinase domain 1 159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28260g00001 289 Gene3D Transferase(Phosphotransferase) domain 1 35 238 - -
Trme28260g00001 289 FunFam L-type lectin-domain containing receptor kinase VIII.1 34 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28260g00001 Trme-Chr28260 3 872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28260g00001 1 268 Receptor kinase-like Gene Family AT3G53380 78.810 3.99e-153 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme28260g00001 Pkinase 1.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28260g00001 - - gmx:100810624 491.115