Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28250g00001 AAAAATGGAAGCTTAGAACAATGGTTGCATCAAAGGGAAGAAAATGTTGAGCATCCAAGAACATTGGATCTTAATCAAAGATTGAATATCATTATTGATGTTGCTTCTGCATTGCACCATCTTCATCATGAATGTGAGCAATTGATCCTTCATTGTGATCTAAAGCCAAGCAATGTCCTTATTGACGAAGACATTGTTGCCCATGTGAGTGATTTTGGTATAGCAAGACTCGTCTCAGCCATTGTTGGTACCTCTCATACAGATAGTAGTACAATTGGAATAAAAGGAACAGTTGGCTATGCTCCTCCAGAGTATGGAATGGGTTCTGAAGTGTCAACATGTGGTGATATGTATAGCTTTGGGATCTTGGTACTAGAAATGCTTACCGGTAGAAGACCTACTGATGAAATGTTTGAAGATGGTCAAAATCTGCATAACTTTGTTGCGATTTTATTTCCTGATAATCTTAGAAAGGTTTTGGACCCACATCTTGTATCAAGAGATGCAAAAGTAGTAATAGAAGATGGAAACAATGAGAATCTTATTCCAAGTGTAGAGGAGTGGTTAGTTTCACTTTTTAAGATTGGACTTGTTTGTTCAATGGAATCACCGGAAGAAAGAATGAATATTGTGGATGTCACTAGAGAGCTTAACATAATCAGAAAGATCTTTCTCGCTGGTGAGATAAAATGA 693 0.3709 KNGSLEQWLHQREENVEHPRTLDLNQRLNIIIDVASALHHLHHECEQLILHCDLKPSNVLIDEDIVAHVSDFGIARLVSAIVGTSHTDSSTIGIKGTVGYAPPEYGMGSEVSTCGDMYSFGILVLEMLTGRRPTDEMFEDGQNLHNFVAILFPDNLRKVLDPHLVSRDAKVVIEDGNNENLIPSVEEWLVSLFKIGLVCSMESPEERMNIVDVTRELNIIRKIFLAGEIK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28250g00001 230 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 221 - -
Trme28250g00001 230 ProSitePatterns Serine/Threonine protein kinases active-site signature. 49 61 IPR008271 GO:0004672|GO:0006468
Trme28250g00001 230 SUPERFAMILY Protein kinase-like (PK-like) 2 217 IPR011009 -
Trme28250g00001 230 Gene3D Transferase(Phosphotransferase) domain 1 1 225 - -
Trme28250g00001 230 SMART serkin_6 1 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28250g00001 230 Pfam Protein kinase domain 3 148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28250g00001 230 ProSiteProfiles Protein kinase domain profile. 1 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28250g00001 230 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28250g00001 Trme-Chr28250 1 807 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28250g00001 2 225 Receptor kinase-like Gene Family AT3G47580 44.053 1.77e-56 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trme28250g00001 Pkinase 6.7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28250g00001 - - vvo:131635889 344.354