Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28238g00001 ATGCCTACTACAGTTCCTACTGCTCCACATCCACCAGCAATGCGTCCTAGAGTGCGGGCAAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAAAGGTTGCGCAGAGAGAGAATAGCCGAAAGAATCAGGGCTTTGCAAGAACTTGTTCCTAGTGTCAACAAGACAGATCGAGCTGCCATGCTGGATGAAATTGTGGATTATGTGAAATTCTTAAGACTTCAAGTGAAGGTTAATTCTTTTGAGATCTTCATGGATTTCACATTTGATTTTGTTTGA 282 0.4362 MPTTVPTAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVNSFEIFMDFTFDFV 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28238g00001 93 Pfam Helix-loop-helix DNA-binding domain 29 73 IPR011598 GO:0046983
Trme28238g00001 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 22 83 IPR036638 GO:0046983
Trme28238g00001 93 SMART finulus 30 79 IPR011598 GO:0046983
Trme28238g00001 93 MobiDBLite consensus disorder prediction 1 29 - -
Trme28238g00001 93 Gene3D - 19 81 IPR036638 GO:0046983
Trme28238g00001 93 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 81 - -
Trme28238g00001 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 24 73 IPR011598 GO:0046983
Trme28238g00001 93 FunFam Basic helix-loop-helix transcription factor 19 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28238g00001 Trme-Chr28238 28 1102 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28238g00001 4 83 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 73.750 7.34e-39 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme28238g00001 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28238g00001 - - gmx:100820324 122.094