Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28236g00001 ATGGGAGATTTAATGTCAAATGTTGCATTGGCATTGGATGGGCAAGATGGAGTTCAGATAGCTTTATCTGGATGCTTTGCAGGTCCTATGTTCAACACACTTGTTGGTTTGGGGGTCTCGTTGCTGCTTGGTGCAGTTTCAAAGAAACCTTCTTTGTACGTGGTGCCTGAAGACGGTAGCTTATTTTACACCATGGGATTTCTTATCACAGGACTTCTATGGTCACTTRTTGTTTTACCACGCAACAACATGCRTCCTAGTAAAATGTTAGGAATGGGTCTCATCGCCCTTTATATGCTATTTCTTTCTTTCAGAGTGTGTACTTCTATGGGGATAATAACAATGGCTGGTTTACGTTAG 360 0.4139 MGDLMSNVALALDGQDGVQIALSGCFAGPMFNTLVGLGVSLLLGAVSKKPSLYVVPEDGSLFYTMGFLITGLLWSLXVLPRNNMXPSKMLGMGLIALYMLFLSFRVCTSMGIITMAGLR 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28236g00001 119 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 1 113 - -
Trme28236g00001 119 Gene3D - 1 107 IPR044880 -
Trme28236g00001 119 Pfam Sodium/calcium exchanger protein 2 105 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28236g00001 Trme-Chr28236 782 1141 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28236g00001 1 113 Antiporters AT5G17860 48.246 2.04e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28236g00001 K13754 - gmx:100796101 199.519