Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28217g00001 ATGTTTGGTTTTGGCGTGTTTGTGCAGTCATCTATAGATGTAGACTTCTTTACAGAATATGGTGAAGGGAGTAGATACATGATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTGGTTTGCTCTGCATATGATACACACACCGGAGAAAAGGTTGCAATAAAGAAAATCAATGACATATTCGAACATGTTTCTGATGCTACCCGCATTCTTCGTGAGATCAAACTTCTTAGACTCCTACGTCATCCTGATATTGTGGAGATCAAGCATATTTTGTTACCTCCTTCTAGAAGGGAATTCAAAGATATATATGTTGTTTTTGAACTTATGGAATCGGATTTACATCAAGTCATCAAAGCAAATGATGACTTGACTCCAGAACATTACCAATTTTTTCTCTATCAGCTTCTTCGGGCAAATGTTTTTCATCGTGATCTAAAGCCAAAAAACATTTTAGCAAACGCTGACTGCAAACTGAAGATTTGCGATTTTGGTCTTGCCAGAGTAGCTTTCAATGATACACCCACTGCTATATTCTGGACA 543 0.3757 MFGFGVFVQSSIDVDFFTEYGEGSRYMIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWT 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28217g00001 181 ProSitePatterns Protein kinases ATP-binding region signature. 32 56 IPR017441 GO:0005524
Trme28217g00001 181 Gene3D Phosphorylase Kinase; domain 1 24 109 - -
Trme28217g00001 181 SMART serkin_6 26 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28217g00001 181 Gene3D Transferase(Phosphotransferase) domain 1 110 173 - -
Trme28217g00001 181 FunFam Mitogen-activated protein kinase 16 121 - -
Trme28217g00001 181 SUPERFAMILY Protein kinase-like (PK-like) 23 173 IPR011009 -
Trme28217g00001 181 Pfam Protein kinase domain 26 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28217g00001 181 ProSiteProfiles Protein kinase domain profile. 26 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28217g00001 181 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 25 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28217g00001 Trme-Chr28217 22 733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28217g00001 9 181 MAP Kinase Gene Family AT5G19010 93.333 9.14e-120 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trme28217g00001 Pkinase 1.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28217g00001 - - bhj:120067250 334.339