Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28209g00001 GCAACTGCTACACTAGCTTCCGAGGCTTTATCCGTTATCGGGGAGAAAAAGAACGAGATCAATCTTGTGCTTGTGGAGGCTCAGTTGCCTGACATGGAAATATATGAGTTCGTAACGAAAATGAAAAGCTCTAATATTTCATCTTTCATTATCACTGCTTATGATGATGACATTCCTTCCATATCACAAGCACTACGTACAGGAGCTAAATGGTGTTTTAGAAAACCGGTTCGGATTTCTGATCTACAGCAGCTGTGGCGATTCGCAGTGTGGAACCGGTTTGAACCAACAATCAGCGAAGAAGTATTTGACTATCGGTGGCCTCTGTCAGAAGTGGTTACGAATGGTCTTGAATACCAACCATCCTTGAATACAGGAGAACAGTCTGTCGAAAGTGTAAATGGTAAAGCACAAGAATCTTTTGATAATAAAGATACTATAGTACTCCTGAAAACCAGAAGGCGTACCTGGACTGATGATTTACATAGGAAGTTCTTGGATGCTGTTCAAACAGCAGGAATAAACGCTCCGCCGAAGACAATATTCGAGCTTATGGATGTGGAAGGACTTAAGAAAGGGACTGTTTCAAACTATTTAAAGGCAGACTTGGGGCAACTGGTGTGCGAGGCTCCCACCATTGGGGACTTGCTATTACAATAA 660 0.4242 ATATLASEALSVIGEKKNEINLVLVEAQLPDMEIYEFVTKMKSSNISSFIITAYDDDIPSISQALRTGAKWCFRKPVRISDLQQLWRFAVWNRFEPTISEEVFDYRWPLSEVVTNGLEYQPSLNTGEQSVESVNGKAQESFDNKDTIVLLKTRRRTWTDDLHRKFLDAVQTAGINAPPKTIFELMDVEGLKKGTVSNYLKADLGQLVCEAPTIGDLLLQ 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28209g00001 219 ProSiteProfiles Response regulatory domain profile. 1 90 IPR001789 GO:0000160
Trme28209g00001 219 Gene3D - 1 97 - -
Trme28209g00001 219 NCBIfam myb-like DNA-binding domain, SHAQKYF class 153 191 IPR006447 GO:0003677
Trme28209g00001 219 SUPERFAMILY CheY-like 4 91 IPR011006 -
Trme28209g00001 219 SUPERFAMILY Homeodomain-like 150 192 IPR009057 -
Trme28209g00001 219 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 197 IPR045279 GO:0009736
Trme28209g00001 219 Gene3D - 152 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28209g00001 Trme-Chr28209 106 1081 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28209g00001 2 200 Response Regulator Gene Family AT2G25180 26.887 1.13e-15 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme28209g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28209g00001 - - tpra:123900016 299.671