Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28205g00001 ATGAAAGAGGAGCTGCTCCGGCGTCCGAGTTTAGCAAATGGTCCTATTATATTGAAAAAGGAGTTGGAAGGATTGGAGTCACATATGCTCGAGAATTCAATATCTCAGGCAAAGAGAAACTACTGGATTGGTGAGGAATATGGTTTAGTCTTATGTGAATTCATGAAAAATGGAAGCCTTCATGATATTTTGCATGAAAAGAAACCACCACCACCCTTAACGTGGAATGTTCGGTGTAAAATAGCTGTTGGAATTGCTCAAGGACTACTATATCTGCATTATGATTGTGTTCCACGAATAGTGCACCGAGACATAAAACCAAAGAACATACTTGTTGACGACAATATGGAGCCTATCATAGCTGATTTTGGCACTGCCCTATGCAAGAAGGTGTTTGAGGATTCTAATAGTCATTCTACAATCCGGAAAATGCTTTCGTCACACGTTGTTGGTACTCCTGGCTATATTGCACCGGAGAATGCATATGATATTGTGCCGGGAAGAAAGTCGGAT 513 0.4094 MKEELLRRPSLANGPIILKKELEGLESHMLENSISQAKRNYWIGEEYGLVLCEFMKNGSLHDILHEKKPPPPLTWNVRCKIAVGIAQGLLYLHYDCVPRIVHRDIKPKNILVDDNMEPIIADFGTALCKKVFEDSNSHSTIRKMLSSHVVGTPGYIAPENAYDIVPGRKSD 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28205g00001 171 Pfam Protein kinase domain 45 159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28205g00001 171 ProSiteProfiles Protein kinase domain profile. 1 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28205g00001 171 FunFam Os07g0541700 protein 55 152 - -
Trme28205g00001 171 SUPERFAMILY Protein kinase-like (PK-like) 41 171 IPR011009 -
Trme28205g00001 171 Gene3D Transferase(Phosphotransferase) domain 1 20 171 - -
Trme28205g00001 171 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 50 164 - -
Trme28205g00001 171 ProSitePatterns Serine/Threonine protein kinases active-site signature. 100 112 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28205g00001 Trme-Chr28205 309 1159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28205g00001 41 171 Receptor kinase-like Gene Family AT1G17750 49.242 3.47e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme28205g00001 Pkinase 3.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28205g00001 - - mtr:11435193 260.381