Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28200g00001 ATGAAAGAAATGGATCAAAGTGAATCACTCGAACTTTTTAGTTGGCATGCATTCAAGCAAGCTAGTCCTGGGAAAGATTTTGCAAGAGTTTCAAGAAATGTTGTTGAGTATTCTGGGGGATTACCGCTAGCTCTGGAAGTCCTTGGGTCATATTTGTTTAATAGGGGGATAGCAGAGTGGAATTCTATATTGGAGAAACTCAAAAGAATTCCTAATGATCAAATACAAAAGAAATTAAAAATTAGTTATGATGGTTTAAATGATGACACCACAAAAGATATATTCCTCCACATAGCATGTTTCTTTATTGGGATGGATAGAAGAGATGTTATACCTATATTAAATGGTTGTGAACTTTTTGCAGAAATTGGCATAAGTGTCCTTGTTGACCGAAGCCTTGTAACTATTGATGATAGGAACAGGCTTGGAATGCATGACTTGCTGCGAGATATGGGAAGAGAAATCATTCGTGACAAGTCGCCCAAGGAGCCCGGGGAGCGTAGCAGGTTATGGTATAATAAGGACGTGCTTGATGTATTAGCAGAACAAACCGTAAGATTCATATACTTGTTTTCATCTGGACTGAAAGTATCTGAAGCTTAA 603 0.3781 MKEMDQSESLELFSWHAFKQASPGKDFARVSRNVVEYSGGLPLALEVLGSYLFNRGIAEWNSILEKLKRIPNDQIQKKLKISYDGLNDDTTKDIFLHIACFFIGMDRRDVIPILNGCELFAEIGISVLVDRSLVTIDDRNRLGMHDLLRDMGREIIRDKSPKEPGERSRLWYNKDVLDVLAEQTVRFIYLFSSGLKVSEA 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28200g00001 200 SUPERFAMILY "Winged helix" DNA-binding domain 73 180 IPR036390 -
Trme28200g00001 200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 98 IPR027417 -
Trme28200g00001 200 Pfam NB-ARC domain 5 83 IPR002182 GO:0043531
Trme28200g00001 200 Gene3D - 3 87 IPR042197 -
Trme28200g00001 200 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 180 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28200g00001 Trme-Chr28200 376 978 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28200g00001 4 171 WRKY Transcription Factor Family AT5G45050 40.828 1.16e-29 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28200g00001 - - lja:Lj0g3v0331109.1 310.842