Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28171g00001 TCATTTACACCCGATATAAAACAAATTCAAGATGATATTGCCGGACCTTTAGGGTTGAAATGGGAGAATTGCAGTGAATCAGAGCGAACCAGAAAACTATGGAGCAGATTAACAAATGGTGAGAAAATTCTTTTGGTCATGGATGATGTGTGGGATCCAGACCCACCTCTTGATTTTGATGCAATAGGGATTCCAAAGTCGGACAATCACAAAGGTTGTAGAGTTCTTGTGACCTCACGTAATAAACAAGTACTCAACAAAATGGATTGTGATAAGAGAATTGAAGTGGAGCTTTTATCAGAAGAAGATGCATGGATCATGTTCAAAAGGTGTGCCCGTATATCCAATAGCTCCTCAAAGAAAGTGATTGATAAGGGACGTAAAATTGCAAAGGAGTGCAAACAATTACCTGTTGCAATTGCAGTTATTGCAAGAAGTTTGAAGGGCCTACAACATCGGGAGCATGAGTTGGATGTGACATTAAAATCCTTGAAGAAGCCTGTATCCATGCATGGTGTTGATGACAATGTGGTTCAAATTTATAAATGTTTGATGTTTAGCTATGATTATATGAAGGATGAGAAAGCTAAGGGATTGTTCCTCTTATGTTCTGTATTCCGAGAAGACGAAGAAATTTCTATTGAAGTTCTAACCAGACTTTGCATAGGAGCGGGTATTTTTGGGGAAGATTATGGCAGCTATGATGATGGTCGAAACCAAGTAGTTGTAGCCAAAAATGAACTCCTAGATTCTTGTTTGTTGTTGGAGGCCGGTCAAAGCGGAGTGAAAATGAATGTCTTTGTTCGTGATGTAGCCCAATGGCAAGATAAAGGATGTGTTTTCTTGTAA 849 0.3899 SFTPDIKQIQDDIAGPLGLKWENCSESERTRKLWSRLTNGEKILLVMDDVWDPDPPLDFDAIGIPKSDNHKGCRVLVTSRNKQVLNKMDCDKRIEVELLSEEDAWIMFKRCARISNSSSKKVIDKGRKIAKECKQLPVAIAVIARSLKGLQHREHELDVTLKSLKKPVSMHGVDDNVVQIYKCLMFSYDYMKDEKAKGLFLLCSVFREDEEISIEVLTRLCIGAGIFGEDYGSYDDGRNQVVVAKNELLDSCLLLEAGQSGVKMNVFVRDVAQWQDKGCVFL 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28171g00001 282 Gene3D - 99 192 IPR042197 -
Trme28171g00001 282 Gene3D - 1 98 IPR027417 -
Trme28171g00001 282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 203 IPR027417 -
Trme28171g00001 282 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1 274 - -
Trme28171g00001 282 Pfam NB-ARC domain 4 189 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28171g00001 Trme-Chr28171 170 1116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28171g00001 39 227 WRKY Transcription Factor Family AT5G45050 27.461 1.91e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28171g00001 - - vvo:131629101 421.009