Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme281707g00001 TTTCAGAATGGTTATGGGACAGATACAGTGGCATTAAGCTCGACGTTGTTCAACAATGGTTATGCGTGTGGGAGTTGTTTCCAGATTAAATGCTACCAATCGAGTGCATGTCACAGAAATGTGGCCTTCACCACCGTCACAGCTACCAATCTTTGTCCTCCTAATTGGTCGAAACCCTCCGATAATGGTGGATGGTGTAACCCACCACGAGTTCATTTTGACATGGCCAAACCCGCTTTCATGAAAATTGCAGAGTGGAAAGCTGGTATCGTCCCTGTTATGTACCGCAGGTAA 294 0.4592 FQNGYGTDTVALSSTLFNNGYACGSCFQIKCYQSSACHRNVAFTTVTATNLCPPNWSKPSDNGGWCNPPRVHFDMAKPAFMKIAEWKAGIVPVMYRR 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme281707g00001 97 PRINTS Expansin/Lol pI family signature 88 97 IPR007118 GO:0005576
Trme281707g00001 97 PRINTS Expansin/Lol pI family signature 13 31 IPR007118 GO:0005576
Trme281707g00001 97 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 97 IPR007112 -
Trme281707g00001 97 CDD DPBB_EXPA_N 1 97 - -
Trme281707g00001 97 Pfam Lytic transglycolase 9 95 IPR009009 -
Trme281707g00001 97 SUPERFAMILY Barwin-like endoglucanases 3 97 IPR036908 -
Trme281707g00001 97 PRINTS Expansin signature 63 80 IPR002963 GO:0009664
Trme281707g00001 97 PRINTS Expansin signature 80 93 IPR002963 GO:0009664
Trme281707g00001 97 PRINTS Expansin signature 4 18 IPR002963 GO:0009664
Trme281707g00001 97 PRINTS Expansin signature 44 54 IPR002963 GO:0009664
Trme281707g00001 97 PANTHER EXPANSIN-A15 2 97 IPR002963 GO:0009664
Trme281707g00001 97 Gene3D - 1 97 IPR036908 -
Trme281707g00001 97 SMART dpbb_1 9 95 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme281707g00001 Trme-Chr281707 1 294 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme281707g00001 1 97 Expansin Gene Family AT1G62980 65.979 9.30e-46 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme281707g00001 - - gmx:100798322 205.297