Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28166g00001 AGTAGTAATACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCCCTGTTGTTTGCAGCTCCTGCAATTGCACTTGCGTATTGGCGAAAAAGAAAACCAGCGGACCATTTCTTTGACGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCTCTACGTGAGCTTCTGGTAGCAACAGATAACTTCAGTAACAAAAACATTCTAGGTAGAGGTGGATTTGGAAAGGTTTATAAAGGACGCTTAGCTGATGGCACACTTGTAGCTGTAAAAAGACTTAAAGAGGAACGCACACAGGGCGGGGAGCTGCAATTTCAAACAGAAGTGGAAATGATCAGTATGGCTGTGCATCGTAATTTGCTTCGGCTTCGTGGTTTTTGCATGACATCTACCGAACGTTTGCTTGTGTATCCTTACATGGCCAATGGAAGTGTAGCATCATGTTTACGAGGTGCCCCATCTTTTCTCTCACATATCTTTTTCTGGAAGAAATGCTATAAGTGCTAG 525 0.4438 SSNTGAIAGGVAAGAALLFAAPAIALAYWRKRKPADHFFDVPAEEDPEVHLGQLKRFSLRELLVATDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTSTERLLVYPYMANGSVASCLRGAPSFLSHIFFWKKCYKC 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28166g00001 174 Pfam Protein tyrosine and serine/threonine kinase 72 157 IPR001245 GO:0004672|GO:0006468
Trme28166g00001 174 SUPERFAMILY Protein kinase-like (PK-like) 48 169 IPR011009 -
Trme28166g00001 174 FunFam Somatic embryogenesis receptor kinase 1 38 145 - -
Trme28166g00001 174 ProSiteProfiles Protein kinase domain profile. 69 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme28166g00001 174 ProSitePatterns Protein kinases ATP-binding region signature. 75 97 IPR017441 GO:0005524
Trme28166g00001 174 Gene3D Phosphorylase Kinase; domain 1 38 145 - -
Trme28166g00001 174 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 51 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28166g00001 Trme-Chr28166 46 668 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28166g00001 17 159 Receptor kinase-like Gene Family AT4G33430 93.007 3.04e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trme28166g00001 PK_Tyr_Ser-Thr 4.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28166g00001 K13416 - gmx:100800522 274.633