Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme28147g00001 AACACATTTGACACTATTTTCTGCCTCGAACAGCATGTTGAGGATCATCACCTCTATTCGCTTAATTATCTACACTTTGGTGACCCAAAGATATGGTATGGAGTACCTGGAAGCCATGCTTCTGCTTTTGAAGATGCAATGAAGAAGCACTTGCCTGATTTGTTCGAGGAAGTACCAAATCTACTAAATGATCTGGTTACTCAATTATCTCCGTCAATTCTTAAATCTGAGGGAGTTCCCGTATACCGCACTGTTCAGCATTCTGGGGAATTTGTCATTACCTTTCCGAGGGGGTACCACTCTGGGTTCAATTGCGGGTTCAACTGTGCAGAAGCAGTAAATGTTGCTCCTGTTGATTGGCTAATGCATGGCCTGAATGCTGTTGAGCTTTACAGTTTACAACGCCGTAAGACATCATTGTCACATGACAAGCTTTTATTTGGATCATCACTGGAAGCTATACGAGCCCTTGCAGAATTAACTCTTCACGGAAAGGAAACTCCAAAAAATTTGAAATGGAAAAGCGTCTGTGGAAAGGATGGAGTTCTTACTAAGGCATTTAAGGTAATGATTCACCACTCTCCTCTTTGA 591 0.4196 NTFDTIFCLEQHVEDHHLYSLNYLHFGDPKIWYGVPGSHASAFEDAMKKHLPDLFEEVPNLLNDLVTQLSPSILKSEGVPVYRTVQHSGEFVITFPRGYHSGFNCGFNCAEAVNVAPVDWLMHGLNAVELYSLQRRKTSLSHDKLLFGSSLEAIRALAELTLHGKETPKNLKWKSVCGKDGVLTKAFKVMIHHSPL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme28147g00001 196 SMART cupin_9 1 132 IPR003347 -
Trme28147g00001 196 SUPERFAMILY Clavaminate synthase-like 12 147 - -
Trme28147g00001 196 ProSiteProfiles JmjC domain profile. 1 132 IPR003347 -
Trme28147g00001 196 Pfam JmjC domain, hydroxylase 11 115 IPR003347 -
Trme28147g00001 196 Gene3D Cupin 3 175 - -
Trme28147g00001 196 PANTHER LYSINE-SPECIFIC DEMETHYLASE 7 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme28147g00001 Trme-Chr28147 2 803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme28147g00001 5 192 JUMONJI Transcription Factor Family AT4G20400 69.681 1.27e-91 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme28147g00001 JmjC 6.6e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme28147g00001 K11446 - gmx:100801775 324.324